Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20897
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05520.1 68416.m00605 F-actin capping protein alpha subunit f...    58   8e-09
At1g64540.1 68414.m07316 F-box family protein contains F-box dom...    32   0.48 
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    30   1.9  
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    30   1.9  
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ...    29   3.4  
At1g65680.1 68414.m07455 beta-expansin, putative (EXBP2) similar...    29   3.4  
At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to...    28   7.8  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    28   7.8  
At2g34590.1 68415.m04250 transketolase family protein similar to...    28   7.8  
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet...    28   7.8  

>At3g05520.1 68416.m00605 F-actin capping protein alpha subunit
           family protein contains Pfam profile: PF01267 F-actin
           capping protein alpha subunit
          Length = 308

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +3

Query: 480 VSTQELLERSWRSVWSLTVGGPAT--ELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASG 653
           +S Q     SWRSVW++     +   +++G L+V  HY+E+GNV+L + K+ +   +   
Sbjct: 178 LSPQNFCNGSWRSVWNIDFQDESQVLDIKGKLQVGAHYFEEGNVELDAKKDFQDSTIFQS 237

Query: 654 EVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKD 764
               A     ++   E  Y  ++   Y  + D TFKD
Sbjct: 238 ADDCAIAIANIIRHHETEYLASLEVAYSKLPDNTFKD 274



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 41/80 (51%)
 Frame = +2

Query: 14  ISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRL 193
           +S  +K  I   F L++P GE N V  D++ +L+++ +  E A  AF  YNK  +  + +
Sbjct: 13  LSYDQKKEIAKWFFLNAPAGEINYVAKDLKAVLSDEEVYNEAAMEAFPVYNKTHMICLEM 72

Query: 194 EGSELYTLITDHNELGGGRF 253
                  +++ ++E+    +
Sbjct: 73  PSGAGDVIVSSYSEINENEY 92



 Score = 31.5 bits (68), Expect = 0.64
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
 Frame = +1

Query: 256 DPRSKCSFRYDHLRKEASEYEPYE----PDRADEPWRAALDEELTAYVAAH*KHGASLV- 420
           DPR+      DH+++  ++  P      P    E +R ALD E+  YV+     G S V 
Sbjct: 94  DPRTAQVAIVDHVKQICTKVRPANDEELPSLYIEEYRYALDAEIQRYVSESYPKGMSAVN 153

Query: 421 ----VDRTVDSGTVQLVACIEDHQFQPKNYWNG 507
                D        +LV  I   +  P+N+ NG
Sbjct: 154 CVKGKDNEGPGSDFELVVIITAMRLSPQNFCNG 186


>At1g64540.1 68414.m07316 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 444

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 260 LAPSVLSGMTIYAKKRPSMNPTSPIERMSLGGRHLMRS*RRTWLHT 397
           L  S  SG + + ++  +   T PI+R+SL GRH   S   +W+ T
Sbjct: 49  LEDSSTSGFSAFLEQTVARLNTCPIKRLSLNGRHYRFSSADSWIST 94


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
            P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
            subsp. vulgare]
          Length = 1158

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +3

Query: 504  RSWRSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVR 683
            RS R   SL    P T   GT+R  + Y         S+K  ++ ++ +G+ A A EF+ 
Sbjct: 983  RSLRQHMSLVSQEP-TLFAGTIRENIMYGR------ASNKIDESEIIEAGKTANAHEFIT 1035

Query: 684  LVSDAENTY 710
             +SD  +TY
Sbjct: 1036 SLSDGYDTY 1044


>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 265 SKCSFRYDHLRKEASEYEPYEPDRADEPWRAALDEELTAYVAAH*KHGASLVVDRTVDSG 444
           SKC+ R D    E  E  P E +  ++P++   D+E+  +   H +H   L  D  V   
Sbjct: 228 SKCAIREDVWNGEELEDVPEEEEEIEDPYKVVNDKEIIHF--CHEEHNLRLGGDDDVTGY 285

Query: 445 TVQLV-ACI 468
              L  ACI
Sbjct: 286 EKMLCDACI 294


>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 539

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 265 SKCSFRYDHLRKEASEYEPYEPDRADEPWRAALDEELTAYVAAH*KHGASLVVDRTVDSG 444
           SKC+ R D    E  E  P E +  ++P++   D+E+  +  +H +H   L  D  V   
Sbjct: 212 SKCAVRKDVWDGEELEDVPEEEEEIEDPYKVINDKEIIHF--SHEEHSLRLGGDDNVTGY 269

Query: 445 TVQLV-ACI 468
              L  ACI
Sbjct: 270 EKMLCDACI 278


>At1g65680.1 68414.m07455 beta-expansin, putative (EXBP2) similar to
           beta-expansin GI:8118428 from [Oryza sativa]; identical
           to SWISS-PROT:Q9SHY6 putative beta-expansin 2 precursor
           (At-EXPB2)[Arabidopsis thaliana]; beta-expansin gene
           family, PMID:11641069
          Length = 471

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 447 GTAGRLYRRSPVSTQELLE--RSWRSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSS 620
           G  GR+  +  + + + L   +SW +VW L V  P   LR  L ++V   E G   + S+
Sbjct: 199 GEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSP---LRAPLSLRVTSLESGKTVVASN 255


>At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to
           GP|8809669| syntaxin related protein AtVam3p
           [Arabidopsis thaliana]
          Length = 268

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 56  LHSPPGEFNEVFNDVRVLLNNDTLL 130
           +H   GE NE+F D+ VL+N+  ++
Sbjct: 188 IHQQIGEVNEIFKDLAVLVNDQGVM 212


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 471  RSPVSTQELLERSWRSVWSLTVGGPAT 551
            +S  S+ EL +R W+S+WS  + G AT
Sbjct: 1274 KSSASSSEL-DRGWQSIWSSLIHGLAT 1299


>At2g34590.1 68415.m04250 transketolase family protein similar to
           SP|O66113 Pyruvate dehydrogenase E1 component, beta
           subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 406

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 528 LTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENT 707
           +  GG    L   +    H Y D  V  +SS+++  P   + E  T  +  ++V+  E  
Sbjct: 345 MRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 404

Query: 708 YQ 713
            Q
Sbjct: 405 CQ 406


>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 beta subunit [Arabidopsis thaliana] GI:2454184;
           identical to cDNA pyruvate dehydrogenase E1 beta subunit
           mRNA, nuclear gene encoding plastid protein GI:2454183
          Length = 406

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 528 LTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENT 707
           +  GG    L   +    H Y D  V  +SS+++  P   + E  T  +  ++V+  E  
Sbjct: 345 MRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 404

Query: 708 YQ 713
            Q
Sbjct: 405 CQ 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,511
Number of Sequences: 28952
Number of extensions: 362123
Number of successful extensions: 1151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)