Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20896
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 228 GTYDILIRN*KEVPLLVAKFDAGFRHFLHRGRHV 127
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = +3

Query: 213 ECRRCP-----TVIMACHFSIEQKTE---GSERKQQMAKEYRVKVEKELREICYDV 356
           +C++C       +     F +E K E       K    K+YRVK E+E +++  +V
Sbjct: 75  DCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = +3

Query: 213 ECRRCP-----TVIMACHFSIEQKTE---GSERKQQMAKEYRVKVEKELREICYDV 356
           +C++C       +     F +E K E       K    K+YRVK E+E +++  +V
Sbjct: 75  DCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +3

Query: 261 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 440
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 441 YRY 449
           + Y
Sbjct: 500 FDY 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,469
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)