Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20895
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0559 + 18516732-18516746,18516893-18517330 33 0.20
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 30 1.9
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 29 2.5
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 3.3
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134... 29 3.3
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 4.3
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 29 4.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 4.3
08_02_1167 + 24847689-24848156 28 5.7
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 28 5.7
06_03_1500 + 30602846-30603185,30603244-30603323,30603477-306035... 28 7.6
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 28 7.6
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384 28 7.6
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 249 EEAEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAK 428
+EAEP P + PA K+++APE + A K E A A
Sbjct: 75 KEAEPEPAEPEAEPA-----KEEVAPEPAAAAEAEAKEAEPAAQVAEEVKEEEAAPAPA- 128
Query: 429 SADIKVEE--PAAQPEDSK 479
+ ++KVEE P A+PE K
Sbjct: 129 AEEVKVEEAAPVAEPEAEK 147
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 402 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEIQKKK 521
+E P AEA S + K EEP AA E +K E +A A ++ K
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAK 209
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 317 IVLFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSIL 198
I+LFG + L + NW ++GF+ S + +GLT + L
Sbjct: 684 ILLFGGFIIPRLSMPNWLKWGFWISPLSYAEIGLTGNEFL 723
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 EAKSADIKVEEPAAQPEDSKTE--VQATVAEIQKK 518
E++S DIK + +AQP +K E VQAT++ + KK
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKK 428
>02_01_0201 -
1347868-1347925,1348040-1348135,1348447-1348523,
1349385-1349453,1349576-1349629,1350295-1350350,
1350487-1350694,1350978-1351066,1351163-1351187
Length = 243
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 493 ACTSVFESSG*AAGSSTLISADFASASGISDDF 395
+CT +F+SS +A + ++A FA AS D+F
Sbjct: 64 SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 64 RRVTGSIF--KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAA 237
RRV+G +F LL+C AA A PVA + P+ +D +K + A
Sbjct: 219 RRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPVGSAGKWMDSLLKKYQDAL 278
Query: 238 ATEEKKPNLLQLVT 279
++ + +Q+ T
Sbjct: 279 HGHKEVVSAMQVGT 292
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 136 AMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKPNLLQLVT 279
A PV+E + A ++EV + DS+ P AT+E +L++ T
Sbjct: 179 AQPVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCT 226
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = +3
Query: 249 EEAEPAPVSNDEVPAIPE-AKKDDIAPEDS----DIAXXXXXXXXXXXXXXXXAKSSEIP 413
++ EP S ++P E +++ I PE S DI +S +P
Sbjct: 1262 QDIEPECPSPPQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILP 1321
Query: 414 DAEAKSADIKVEEPAAQPEDSKTEV 488
++ + + DIK E+P+ P EV
Sbjct: 1322 ESSSDNQDIKCEDPSPTPISKSKEV 1346
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 393 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 494
AK E P+AEA++A VEE AA P + E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 169 PAQPILEVAPKIDDSVKPTEVAAATE 246
P P E PK+DD +P +VA +TE
Sbjct: 222 PLPPPSESPPKVDDDNEPPKVAGSTE 247
>06_03_1500 +
30602846-30603185,30603244-30603323,30603477-30603566,
30603677-30603909,30604126-30604204,30604320-30604464,
30604815-30604877,30605343-30605374,30605475-30605516,
30605599-30605712
Length = 405
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 EAKSADIKVEEPAAQPEDSKTE--VQATVAEIQKK 518
E++S DIK + +AQP +K E VQAT++ + KK
Sbjct: 283 ESQSEDIKPADWSAQPISAKKEPLVQATLSSMFKK 317
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 293 SGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG*AG 168
+G+L + WS +G SS A + S+++G+T R+ AG
Sbjct: 95 AGHLSSSQWSVWGPASSTNAVIKGDTSSSAVVGSTGRVLLAG 136
>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
Length = 335
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 58 KRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVK 219
KR G + ++ LLLC+A AA + A+P A P P+ E+ + +V+
Sbjct: 96 KRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPC-PLRELLREYSAAVR 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,945
Number of Sequences: 37544
Number of extensions: 242662
Number of successful extensions: 791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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