Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20895
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.55
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 30 1.7
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 30 1.7
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 30 1.7
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 30 1.7
Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical pr... 29 2.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.1
AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode asta... 28 5.1
AL132898-20|CAC14415.2| 243|Caenorhabditis elegans Hypothetical... 27 8.9
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 249 EEAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 341
E+ P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 249 EEAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 341
E+ P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 127 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 243
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 127 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 243
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 127 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 243
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 127 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 243
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical
protein B0035.5 protein.
Length = 522
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 518 EKPSATDAEGSADSAAIIPNMVKKIDLAPTVXSDAAAIPEIKTPEAA 658
EKP++ +AE D + K ++L V A PE PEA+
Sbjct: 280 EKPASLNAEDIRDEKVKVLKAAKVVELKDVVVGQYIASPEFDHPEAS 326
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +3
Query: 252 EAEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXA-KSSEIPDAEAK 428
E EPA + + +PE + P +A K +P+ A
Sbjct: 4774 EVEPAEIVEQKDVPVPETSAPSVEPTVEKLAPVESKETSEVQQAEIVEQKDVPVPETSAP 4833
Query: 429 SADIKVEEPAAQPEDSKTEVQATVAEIQKKKNL 527
S + VE+ A P +SK + AEI ++K++
Sbjct: 4834 SVEPTVEKLA--PAESKETSEVQPAEIVEQKDV 4864
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +3
Query: 252 EAEPAPVSNDEVPAIPEAKKDDIAPEDSDIA-XXXXXXXXXXXXXXXXAKSSEIPDAEAK 428
E +PA + +V +PE + P +A K +P+ A
Sbjct: 5510 EVQPAEIVEQKVVPVPETSAPTVEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPETSAP 5569
Query: 429 SADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPS 569
+ + VE+ A P +SK + AEI ++K+ V + + PT P+
Sbjct: 5570 TVEPTVEKLA--PVESKETSEVEPAEIVEQKD-VPVPETSAPTVEPT 5613
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +3
Query: 252 EAEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXA-KSSEIPDAEAK 428
E EPA + + +PE + P +A K +P+ A
Sbjct: 4774 EVEPAEIVEQKDVPVPETSAPSVEPTVEKLAPVESKETSEVQQAEIVEQKDVPVPETSAP 4833
Query: 429 SADIKVEEPAAQPEDSKTEVQATVAEIQKKKNL 527
S + VE+ A P +SK + AEI ++K++
Sbjct: 4834 SVEPTVEKLA--PAESKETSEVQPAEIVEQKDV 4864
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +3
Query: 252 EAEPAPVSNDEVPAIPEAKKDDIAPEDSDIA-XXXXXXXXXXXXXXXXAKSSEIPDAEAK 428
E +PA + +V +PE + P +A K +P+ A
Sbjct: 5530 EVQPAEIVEQKVVPVPETSAPTVEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPETSAP 5589
Query: 429 SADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPS 569
+ + VE+ A P +SK + AEI ++K+ V + + PT P+
Sbjct: 5590 TVEPTVEKLA--PVESKETSEVEPAEIVEQKD-VPVPETSAPTVEPT 5633
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +3
Query: 252 EAEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXA-KSSEIPDAEAK 428
E EPA + + +PE + P +A K +P+ A
Sbjct: 4774 EVEPAEIVEQKDVPVPETSAPSVEPTVEKLAPVESKETSEVQQAEIVEQKDVPVPETSAP 4833
Query: 429 SADIKVEEPAAQPEDSKTEVQATVAEIQKKKNL 527
S + VE+ A P +SK + AEI ++K++
Sbjct: 4834 SVEPTVEKLA--PAESKETSEVQPAEIVEQKDV 4864
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +3
Query: 252 EAEPAPVSNDEVPAIPEAKKDDIAPEDSDIA-XXXXXXXXXXXXXXXXAKSSEIPDAEAK 428
E +PA + +V +PE + P +A K +P+ A
Sbjct: 5530 EVQPAEIVEQKVVPVPETSAPTVEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPETSAP 5589
Query: 429 SADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLVLLMQKVLPTQLPS 569
+ + VE+ A P +SK + AEI ++K+ V + + PT P+
Sbjct: 5590 TVEPTVEKLA--PVESKETSEVEPAEIVEQKD-VPVPETSAPTVEPT 5633
>AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode astacin
protease protein 2 protein.
Length = 293
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 190 VAPKIDDSVKPTEVAAATEEKKPNL-LQLVTTRYPLYQRPK 309
VAPK+ + K E+A +T+ +K ++L+ T+ P ++ K
Sbjct: 15 VAPKVLEPEKDDEIAVSTQREKTFFDMKLILTKLPTFEPSK 55
>AL132898-20|CAC14415.2| 243|Caenorhabditis elegans Hypothetical
protein Y59A8B.19 protein.
Length = 243
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 79 SIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 258
SIF + L+ C+A S +P E VP P + I D V+ V E
Sbjct: 3 SIFYLLALIACVANFGFSQDLPAPE----VPEIPEVPDVGAITDQVQVEAVLKLVTELLA 58
Query: 259 NLLQLVTT 282
+L+LVT+
Sbjct: 59 TVLKLVTS 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,690
Number of Sequences: 27780
Number of extensions: 206886
Number of successful extensions: 915
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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