Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20892
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 31 0.19
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 1.7
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 4.0
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 4.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.0
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 9.2
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 25 9.2
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 9.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 9.2
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
Frame = +1
Query: 412 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 501
R++HEA+G+ FG + P E+FH++ SG +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 422 MKHTDLEDSVMRNLNASITQYPVDKNVQKLLIS 520
+K +EDS + N+ AS+ + VDKN + +L+S
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN-KLILVS 447
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 475 YSISGRQERPEAIDIIQTDLQCCGI 549
Y+I GR+ P+ ++ +++ L+ C I
Sbjct: 123 YAIKGREASPQTVEFLRSQLEKCKI 147
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 410 IAGYMKHTDLEDSVMRNLNASITQYPV-DKNVQKLLISYKQT 532
I GY+K + + +NL A++ Q V D + +L YKQT
Sbjct: 96 IEGYIKEIERLSNSNKNLQAAVLQMAVSDTDDPRLKEEYKQT 137
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 475 NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 371
+GS+ + H++ FQ H T + + EY E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 478 SISGRQER-PEAIDIIQTDLQCCGINSPADWADHGLP 585
S+S RQ+ EA D+I+ DL+ G + D G+P
Sbjct: 1049 SLSNRQQLLDEAADLIEKDLEFAGATAIEDKLQVGVP 1085
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 330 APQQPKNATMKTIMPTMMRT 271
AP QPK + +I+PT+ RT
Sbjct: 810 APVQPKTSQASSILPTVPRT 829
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 471 PLLNIR*TRTSRSY*YHTNRLAMLRYKQSGRLGRSRSAHTEHVLLRPGD 617
PL NIR Y Y T + L + L SA T ++L GD
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 361 VFSIPLDHIRG*TGCGHRWLHEAYGL 438
V ++PLDH+ G + W + GL
Sbjct: 55 VLALPLDHVTGSSESMENWFYSILGL 80
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 322 LWRCQREPLHDNNVFSIPLDHIRG*TGCGHRWLHEAYGLGRFGYAQPERFHYSISGRQER 501
L R + +++N++F L ++ G+ + GLG G+ P + G ++
Sbjct: 143 LQRLDKFRINENDIFEA-LRNVYDRVNGGYACVAMIAGLGVLGFRDPNGIRPLVIGERDT 201
Query: 502 PEAID 516
PE D
Sbjct: 202 PEGKD 206
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 23 LGVLCWRWCESFYS 64
LG++C RWC F+S
Sbjct: 2215 LGLICPRWCLEFWS 2228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,980
Number of Sequences: 5004
Number of extensions: 51243
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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