Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20892
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705...    29   2.4  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    28   7.2  
07_01_1023 + 8840754-8842988,8843189-8843362                           27   9.5  

>03_02_0277 +
           7056341-7056391,7056681-7056764,7057107-7057223,
           7057335-7057772,7057889-7058295,7058371-7058470,
           7058707-7058793,7059056-7059544
          Length = 590

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 475 YSISGRQERPEAIDIIQTDLQCCGINSPADW 567
           Y ISG++  PE   +I+  + CC ++SP  W
Sbjct: 402 YLISGQRVNPE---LIEYHILCCRVHSPTQW 429


>04_04_0214 -
           23674270-23676858,23677574-23680843,23680941-23681119,
           23681200-23681559,23681645-23682086,23682199-23682332,
           23682479-23682680
          Length = 2391

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 367 SIPLDHIRG*TGCGHRWLHEAYGLGRFGYAQPERFH--YSISGRQERPEAIDIIQTDLQ 537
           S+P+D   G  G G   L  AY L + GY     F   +++SG  E  +  + + +D +
Sbjct: 17  SLPVDTRIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGMCESIDIEEELGSDFE 75


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 200 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIK 90
           A +Q++     ++K+E    ++ TG  T   H YS+K
Sbjct: 755 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVK 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,668
Number of Sequences: 37544
Number of extensions: 350276
Number of successful extensions: 827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)