Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20892
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    33   0.13 
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.17 
U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    30   1.2  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical pr...    28   4.9  
X98132-1|CAA66831.1|  387|Caenorhabditis elegans N-acetyllactosa...    28   4.9  
Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U40958-1|AAA81761.1|  165|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 499
           CCGA++EN+C+ ++F+V L ++   E+A  I GY  H      +   L   + +Y   + 
Sbjct: 71  CCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRG 130

Query: 500 VQ 505
           V+
Sbjct: 131 VE 132



 Score = 35.9 bits (79), Expect = 0.024
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 111 LEGGMSCVKYLMFCFNLLFAITGLIILIVG 200
           +EGG++ VKYL+F  NL+  + GL ++IVG
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31



 Score = 32.3 bits (70), Expect = 0.30
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 418 LHEAYGLGRFGYAQPERFHYSISGRQERPEAIDIIQTDLQCCGINSPADWADHGLPIPST 597
           LH+++ LG     Q     Y  S   E   A D      +CCG+ + +DW      IP +
Sbjct: 106 LHDSFRLGIGNQLQTGMVRYHESRGVE--SAWDKTHQLFECCGVTNSSDWLTF-TTIPDS 162

Query: 598 CC 603
           CC
Sbjct: 163 CC 164


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +2

Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 499
           C G+++EN   +  +S  L ++ +AE + G+  Y     L++ +   LN  +  Y  D +
Sbjct: 103 CVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVGYRDDPD 162

Query: 500 VQKLLISYKQT 532
           +Q L+ S ++T
Sbjct: 163 LQLLIDSMQET 173



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 129 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 236
           CVKY +F FN++F + G  +L+ G+ A+I    ++N
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 511 IDIIQTDLQCCGINSPADW 567
           ID +Q    CCGIN   DW
Sbjct: 167 IDSMQETWMCCGINGADDW 185


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +1

Query: 514 DIIQTDLQCCGINSPADWA-----DHGLPIPSTCCSAQEIN 621
           D +Q +LQCCG+++  DW       + L  P +CC  Q  +
Sbjct: 138 DHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFD 178


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 102 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 236
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -1

Query: 125 HSTFESHCYSIKYYRQIVLLRNKMIHTSANKAHRATVS 12
           H T  SH Y +  YR I+ LR K+  TS NKA  ATV+
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENKA-EATVN 178


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 122  STFESHCYSIKYYRQIVLLRNKMIHTSANKAH 27
            +TF S C S K   ++  + NKM+H +A+ AH
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNADIAH 1972


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 475
           C GA K N C +  F   L++ F  ELA  +  + K   ++  V  ++  +I
Sbjct: 75  CIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTI 126



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 505 EAIDIIQTDLQCCGINSPADW 567
           +A D +Q   +CCG+ +  DW
Sbjct: 138 DAFDTVQEKFECCGVKTYTDW 158


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 323 CGAVKENHCMIITFSVFLLIIFVAELAVG 409
           CGAV  +  +++ F +FL+  F+A++A+G
Sbjct: 46  CGAVNRSRFLLLAFVMFLIGTFLADVAMG 74


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +1

Query: 505 EAIDIIQTDLQCCGINSPADW-----ADHGLPIPST 597
           +A++ +Q D +CCG N+  DW      DH LP   T
Sbjct: 148 KAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKT 183


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 326 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 451
           GAV  +  ++  + +F++I+F+ E+A+GI   +K   +  +V
Sbjct: 91  GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132


>Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B12.11 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 332 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 508
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58


>X98132-1|CAA66831.1|  387|Caenorhabditis elegans
           N-acetyllactosamine synthase protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 332 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 508
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58


>Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical
           protein F30A10.5 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 220 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 71
           +F   L P +  + P++   +  QN+R    +IP   AI I   QL +   LY
Sbjct: 54  KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106


>U40958-1|AAA81761.1|  165|Caenorhabditis elegans Hypothetical
           protein F09F9.2 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 545 PQHCKSVCMISIASGRSCLPDIE*WKRSGCA*PNLPSPYASCNQ 414
           P+HCK V   S   G   + D+  W  S CA   +  P A+C +
Sbjct: 112 PKHCKQVEHYSKTYG---VKDVPAWVASNCAFAKMYLPGATCEE 152


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 344 HCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 487
           H + +  S  LLII  A    G+   + H   +D V+RN+N  I Q P
Sbjct: 568 HAIRLIRSGGLLIINQALNGGGVMSSIDHMTNDDRVIRNMNIRIKQDP 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,740
Number of Sequences: 27780
Number of extensions: 299332
Number of successful extensions: 968
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)