Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20891
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.5  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     26   4.5  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   6.0  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   7.9  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 313 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 480
           RH D +N+ L +  G+G+P I    +  I+  E  NL +++   +  S+  S+     P+
Sbjct: 99  RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156

Query: 481 LCS 489
           + S
Sbjct: 157 IKS 159


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 74  EYIITADLQTCLTEALQCSYSFIV-SPIIH 160
           E+I   +L T L E L+C Y  I  +P +H
Sbjct: 395 EFISNTNLPTILPEILECFYDNITYTPFVH 424


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 463 WACVPMLCSRTYRECMKMMKKRKLG 537
           WA    L  RTY     M K RKLG
Sbjct: 354 WAFCDFLFGRTYNVISSMSKARKLG 378


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 253 EVAKLSPYINVDSPSATVRQRHEDYL 330
           E  KL PY N DS   T ++    +L
Sbjct: 221 EEVKLEPYTNTDSTDLTTKEEARSFL 246


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 122 QCSYSFIVSPIIHPRFR 172
           QC +SF+ +P+ HP  +
Sbjct: 158 QCKFSFLFAPMCHPTLK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,100
Number of Sequences: 5004
Number of extensions: 53099
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)