Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20891
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 34 0.070
01_06_1735 - 39545146-39545451,39545810-39545945,39546072-395462... 31 0.86
10_08_0406 - 17688069-17690643,17691065-17691132 30 1.1
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432 30 1.1
12_02_0929 - 24493168-24493458,24493545-24493643,24493768-244938... 29 2.6
05_06_0016 + 24958681-24958872,24959390-24959472,24959534-249596... 29 2.6
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 28 4.6
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 28 4.6
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 28 4.6
11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103... 28 6.1
02_05_0506 + 29613307-29613601,29613641-29613678,29613679-296138... 27 8.0
01_06_1384 + 36888265-36889577,36889683-36889908 27 8.0
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 34.3 bits (75), Expect = 0.070
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 65 CGYEYI---ITADLQTCLTEALQCSYSFIVSPIIHPRFRRQSTNAGKNGGFTRSDMVLSP 235
CG E + +L L+ +L S+ F+++P++ P +R G SD+VL P
Sbjct: 16 CGVEVLDFPAGEELPAVLSHSLSSSFDFLLAPLVDPDYR---PTPGSVLPVAASDLVLGP 72
Query: 236 QDWTS 250
W+S
Sbjct: 73 AQWSS 77
>01_06_1735 -
39545146-39545451,39545810-39545945,39546072-39546214,
39546700-39546828,39547198-39547446,39548032-39548403
Length = 444
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 229 ITSRLD*QEVAKLSPYINVDSPSATVRQRHEDYLNE 336
+T +L QE+++ S + VD PS R EDY +E
Sbjct: 270 LTEKLTRQEISETSSRVEVDDPSQLEVDRDEDYRSE 305
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 382 SIHGRESNNLARILQTYYETSHHPSLIWAC 471
++H S N+ R++ TY+ +H P L W C
Sbjct: 554 TVHVFSSWNIVRMVCTYHRAAHRPWLRWLC 583
>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
Length = 314
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +1
Query: 286 DSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIW 465
D PS + + + S+ RG+G A+ IHG + LA + + P +++
Sbjct: 176 DDPSVVITTYEGQHCHHTASFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPPPQPHMLY 235
>12_02_0929 -
24493168-24493458,24493545-24493643,24493768-24493872,
24494101-24494193,24494438-24494530,24494646-24494699,
24494816-24494917,24495058-24495132,24495245-24495418
Length = 361
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 147 RPLFTHVFVGNPQMPVKMVVLRGQIWF 227
R L T +FVGNP + M ++ WF
Sbjct: 252 RDLITRIFVGNPASRITMPEIKNHPWF 278
>05_06_0016 +
24958681-24958872,24959390-24959472,24959534-24959621,
24960250-24960468,24960958-24961692,24961780-24962124,
24962196-24962411,24962551-24962847
Length = 724
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 379 ISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECMKMMKKRKLGMSPGTGG 558
I +H +E N A + + +PSL + + S TY E M K + M PG G
Sbjct: 513 IGVHVQEGNLAAPRVSSRSTIEMNPSLRYDMLAQSRSETYNEVPYSMVKEPVPMGPGPWG 572
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 534 WNEPWYWWS 560
W +PWYWWS
Sbjct: 285 WFKPWYWWS 293
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 28.3 bits (60), Expect = 4.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 534 WNEPWYWWS 560
W +PWYWWS
Sbjct: 244 WFKPWYWWS 252
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 376 MISIHGRESNNLARILQTYYET--SHHPSLIWACVPMLCSRTYRECMKM 516
+ SI E NL+ +L E SH + C P LCS R C K+
Sbjct: 796 LASIECEECPNLSMLLPPSSERCISHAQDINITCFPNLCSLNIRNCPKL 844
>11_01_0127 +
1031690-1031952,1032850-1032857,1034679-1034927,
1034938-1035009,1036609-1036724,1037482-1037545,
1037742-1037773,1037804-1037850,1038627-1038660,
1039308-1039652,1040425-1040718,1040968-1041232,
1041359-1041480,1041754-1042059
Length = 738
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 173 RQSTNAGKNGGFTRSDMVLSPQDWTSRK*LSYLRTLT 283
R + +AG NGG R VLS W S + YL LT
Sbjct: 132 RGTIDAGGNGGRGRRSKVLSRTRWLSPELAIYLACLT 168
>02_05_0506 +
29613307-29613601,29613641-29613678,29613679-29613802,
29614358-29614484,29614915-29615002,29615539-29615631,
29616380-29616529
Length = 304
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +1
Query: 274 YINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHP 453
Y V P + + L Y +G VP E + +L + +S P
Sbjct: 161 YFGVPVPRGVYVGGYGQHRTLPLGYYQGFPVPQYSNMFQFMEFHPQQILLANHLASSARP 220
Query: 454 SLIWACVPMLCSRTYREC 507
L+ VP+ CSRT +C
Sbjct: 221 FLVG--VPLDCSRTKEQC 236
>01_06_1384 + 36888265-36889577,36889683-36889908
Length = 512
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 123 NAVIHL*FRPLFTHVFVGNPQMPVKMVVLRGQIWFYHLKIGLAGSS 260
+A +H F LF H+F G P + V +++L Y + +A ++
Sbjct: 198 HAEMHASFVWLFQHIFSGTPALMVSVMLLLANFTVYSMGDSVAAAA 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,791
Number of Sequences: 37544
Number of extensions: 332252
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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