Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20890
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    29   1.0  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.4  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   9.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.7  

>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 506 SQCPLYVRQAY-LSASWDKNIKLVHLDKSAKCRINF 610
           S C L     Y LSASWDK I+L  L+K  +C   F
Sbjct: 67  SDCALSFDSHYALSASWDKTIRLWDLEK-GECTHQF 101


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 FTNQGGWLVELLEKKDGNIAAVL 171
           F N G WL EL E  D NI  +L
Sbjct: 98  FDNVGRWLKELREHADSNIVIML 120


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 105 EAHRQHLTQCLIDMWLRVVESWRS 34
           EAH + LT  L+ M L + + W+S
Sbjct: 103 EAHNEMLTMQLLLMLLNIADGWKS 126


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = -2

Query: 479 RCLISIFFITHYYMNI----NHISTINEKTIIVIVKQKSNATV----KLFFT*NNLDMIM 324
           RC I    IT  + NI    N IS I     + + + K+   V     LFF+   +D  +
Sbjct: 232 RCTIPKRVITSMHNNIAELYNPISCIKSLPYLSLEEAKTTLEVHTDRSLFFSGQIIDFTI 291

Query: 323 CYIHS 309
           CY H+
Sbjct: 292 CYTHN 296


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 479  RCLISIFFITHYYMNINHISTINEKTIIVIVKQKSNATVKLF 354
            RCL S         N+  +  +NE  + +++   S+ T+KL+
Sbjct: 1023 RCLNSFKTSASATTNVTDMQLLNEDDVALLMTGSSDGTIKLY 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,994
Number of Sequences: 5004
Number of extensions: 51269
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)