Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20890
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0848 + 11765607-11766143                                         30   2.5  
02_02_0241 - 8204430-8205398                                           29   3.3  
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    29   4.4  
08_01_0472 + 4165946-4166096,4166269-4166429,4166528-4166592,416...    29   5.8  
01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472...    29   5.8  
02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791...    28   7.7  

>03_02_0848 + 11765607-11766143
          Length = 178

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 462 DTY*APTLVLPMFHDRSAHFTSGRRTCPPLGT 557
           DT+  PTL+L    DRSA F    RTCP L T
Sbjct: 26  DTFACPTLLLR--RDRSAEFGVVERTCPCLET 55


>02_02_0241 - 8204430-8205398
          Length = 322

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 527 RQAYLSASWDKNIKLVHLDKSAKCR 601
           R A+LSASWD  +KL   D+ A  R
Sbjct: 124 RDAFLSASWDDTLKLWSPDRPASVR 148


>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
            24072458-24072685,24072785-24072918,24073005-24073088,
            24073231-24073521,24073599-24073931,24074016-24074266,
            24074354-24074620,24074707-24074867,24074978-24075294,
            24075386-24075667,24075753-24076054,24076147-24076237,
            24076326-24076379,24076497-24076573,24076700-24076859,
            24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = -1

Query: 144  LLQELDQPAPLVSEAH------RQHLTQCLIDMWLRVVESWRS 34
            L+++L QPAP  S+ +      +  LTQC+  +W + +  WR+
Sbjct: 1159 LIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRN 1201


>08_01_0472 +
           4165946-4166096,4166269-4166429,4166528-4166592,
           4166761-4166801,4167260-4167348,4167434-4167547,
           4167658-4167735,4167951-4168016,4168462-4168542,
           4168631-4168702,4168936-4168980,4169270-4169404
          Length = 365

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 26/81 (32%), Positives = 37/81 (45%)
 Frame = +1

Query: 67  IDEALRQMLAMGFTNQGGWLVELLEKKDGNIAAVLDLLTPVNPKI*RXXXXXXXXXXXXX 246
           +DE     L  G T+Q   L EL + +DG   AV+ +L   NP + R             
Sbjct: 69  LDERGAAFLDGGETSQSLTLSELFDTRDG---AVVPMLKAANPPV-RANVLYLDPEFASV 124

Query: 247 XSKIAMKQSFLNQYNY*LQFQ 309
            SK A+K+ FL  +N  + FQ
Sbjct: 125 ISK-AVKEVFLPYFNQAIWFQ 144


>01_06_0028 -
           25746250-25746526,25746839-25746975,25747089-25747292,
           25747747-25747855,25747951-25748081,25748156-25748253,
           25748827-25749018,25749075-25749177,25749275-25749445
          Length = 473

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +2

Query: 521 YVRQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTFTQKKSANSTLKLEFRVLLFE*T 700
           YV  A ++ S D   +LV L +   C+IN    N  + +Q K       +EFR +L +  
Sbjct: 373 YVMLAGVNDSVDDAKRLVDLVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQ-D 431

Query: 701 GLLLMNYQHLYDITMTVC 754
           GL++       D  M  C
Sbjct: 432 GLVVFVRLSRGDDQMAAC 449


>02_05_0981 -
           33278735-33278746,33278882-33279022,33279145-33279199,
           33279787-33279950,33280043-33280139,33280507-33280678,
           33281107-33281182,33281545-33281661,33281928-33282007,
           33282225-33282398,33282636-33282765,33282855-33282941,
           33283039-33283302,33284131-33284256
          Length = 564

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 399 YCFFINSRDVINIHIVMR--NKKDTY*APTLVLPMFHDRSAHFTSGRRTC 542
           Y   ++SRD++      R  NK D Y  P    P+FH+R A + S    C
Sbjct: 305 YGCVVSSRDMVTPKDPTRCFNKADYYAHPEHYKPVFHERIAPYASAIVNC 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,511
Number of Sequences: 37544
Number of extensions: 294197
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)