BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20890 (816 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001 SB_17662| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 28 7.9 >SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 428 Score = 40.7 bits (91), Expect = 0.001 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = +1 Query: 55 PKPHIDEALRQMLAMGFTNQGGWLVELLEKKDGNIAAVLDLL 180 P ++ A+ QM AMGF + GWL +L++ K+ +I VLD + Sbjct: 381 PVDPLEVAIAQMRAMGFEDDSGWLAQLIKSKEYDIGKVLDAI 422 >SB_17662| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 186 Score = 30.3 bits (65), Expect = 2.0 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = +2 Query: 461 RYLLSTDIGTADVS*SQCPLYV--RQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTF 634 R ++ ++G D +C +++ R Y+SASWDK +++ + K+++ R + K Sbjct: 126 RKIVQKNVGHTDSV--RCVMHIPERSQYISASWDKTVRIWNAFKNSRKR-----STKDNK 178 Query: 635 TQKKSANS 658 Q + ANS Sbjct: 179 EQSEDANS 186 >SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) Length = 1709 Score = 28.3 bits (60), Expect = 7.9 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 322 HIIISKLFQVKNNLTVAFDFCLTITII 402 H+++SKL QV N+LT D +TI+ I Sbjct: 686 HLLVSKLSQVINSLTAIADGAVTISRI 712 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,639,644 Number of Sequences: 59808 Number of extensions: 361845 Number of successful extensions: 711 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 711 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2275631710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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