Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20890
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_17662| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                28   7.9  

>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 55  PKPHIDEALRQMLAMGFTNQGGWLVELLEKKDGNIAAVLDLL 180
           P   ++ A+ QM AMGF +  GWL +L++ K+ +I  VLD +
Sbjct: 381 PVDPLEVAIAQMRAMGFEDDSGWLAQLIKSKEYDIGKVLDAI 422


>SB_17662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +2

Query: 461 RYLLSTDIGTADVS*SQCPLYV--RQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTF 634
           R ++  ++G  D    +C +++  R  Y+SASWDK +++ +  K+++ R     + K   
Sbjct: 126 RKIVQKNVGHTDSV--RCVMHIPERSQYISASWDKTVRIWNAFKNSRKR-----STKDNK 178

Query: 635 TQKKSANS 658
            Q + ANS
Sbjct: 179 EQSEDANS 186


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 322 HIIISKLFQVKNNLTVAFDFCLTITII 402
           H+++SKL QV N+LT   D  +TI+ I
Sbjct: 686 HLLVSKLSQVINSLTAIADGAVTISRI 712


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,639,644
Number of Sequences: 59808
Number of extensions: 361845
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)