Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20890
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    32   0.40 
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    30   1.6  
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    29   2.8  
At2g11626.1 68415.m01251 hypothetical protein                          29   2.8  
At3g15890.1 68416.m02010 protein kinase family protein contains ...    29   3.7  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    29   4.9  
At1g60230.1 68414.m06783 radical SAM domain-containing protein  ...    28   8.5  
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec...    28   8.5  

>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 82  RQMLAMGFTNQGGWLVELLEKKDGNIAAVLDLLTPVNPK 198
           ++ +  GF N G W  +L+ +K G I AV D+   +  K
Sbjct: 207 QRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITGAIKNK 245


>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 GFTNQGGWLVELLEKKDGNIAAVLDLLTPV-NPK 198
           GF N G W  +L+ +K G + AV D+   + NP+
Sbjct: 213 GFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPE 246


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 100 GFTNQGGWLVELLEKKDGNIAAVLDL 177
           GF N G W  +L+  K G I AV D+
Sbjct: 213 GFGNVGSWAAKLISDKGGKIVAVSDV 238


>At2g11626.1 68415.m01251 hypothetical protein
          Length = 242

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 512 CPLYVRQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTF 634
           CP Y R +YL  S D  +K +    ++ CRI  +Y   +TF
Sbjct: 52  CPGYSRVSYLKPSTD--LKPITTSVTSSCRIMLSYRATRTF 90


>At3g15890.1 68416.m02010 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 361

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 147 LLLQELDQPAPLVSEAHRQHLTQCLIDMWLR 55
           LL+ E  Q   LVS  H QH  +CL+D W +
Sbjct: 109 LLVYEYMQNLSLVSHLHGQHSAECLLD-WTK 138


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1423

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -1

Query: 144  LLQELDQPAP------LVSEAHRQHLTQCLIDMWLRVVESWRS 34
            L++EL QPAP        ++  +  LTQC+  +W +    WR+
Sbjct: 1124 LIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRN 1166


>At1g60230.1 68414.m06783 radical SAM domain-containing protein
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 458

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +2

Query: 521 YVRQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTFTQKKSANSTLKLEFRVLLFE*T 700
           YV  A ++ S D   +LV L +   C+IN    N  + +Q         ++FR +L E  
Sbjct: 354 YVMLAGVNDSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGG 413

Query: 701 GLLLMNYQHLYDITMTVC 754
             +LM +    D  M  C
Sbjct: 414 CTVLMRFSRGND-QMAAC 430


>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
           receptor (PEX7) identical to peroxisomal targeting
           signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
           thaliana]; WD-40 repeat protein family member; contains
           6 WD-40 repeats (PF00400); similar to peroxismal
           targeting signal 2 receptor (PTS2R) (Peroxin-7)
           (PEX7)(SP:O00628) [Homo sapiens]
          Length = 317

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 527 RQAYLSASWDKNIKLVHLDKSAKCR 601
           R ++L++SWD  +KL  +D+ A  R
Sbjct: 119 RDSFLTSSWDDTVKLWAMDRPASVR 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,241
Number of Sequences: 28952
Number of extensions: 246470
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)