Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20889
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.7  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.9  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   8.8  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   8.8  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   8.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 468 LPIGLRFLRQSLHSGLCSVCFK 533
           LP G    ++  HSGLC  CF+
Sbjct: 346 LPCGEHTCKKRCHSGLCGACFE 367


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 544 FNASLKQTEQSPLWRDCRRNRSPI 473
           F+ SLKQ+E     +DC R R PI
Sbjct: 335 FSESLKQSEILETIKDCLRQRKPI 358


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  QPHRRGVACL*AEGTAHLERHL 159
           QP +R +AC    G  H+ +HL
Sbjct: 517 QPEKRNLACGGLNGNVHIYKHL 538


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 260 FGQQFSLLVVYDRYFCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQ 117
           F Q  +L   +DR   +R ++G    E+  + P+K + +  +PS H +
Sbjct: 468 FAQHTTLPSCHDR-IPIR-YKGQLYFEQPDYVPSKMMDELMIPSKHNR 513


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 225 SLLLCQDL*RTHCC*KREFRTKQMSFQVRSPFS 127
           SL+LC    R   C KRE R+K+      SP+S
Sbjct: 479 SLILCT---RNGTCWKRELRSKKREKSSSSPYS 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,928
Number of Sequences: 5004
Number of extensions: 45168
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)