Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20889
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0827 + 32260313-32260525,32261862-32262716 37 0.015
09_04_0568 + 18591757-18592251 29 2.3
08_02_1177 + 24946763-24947275 29 2.3
02_04_0078 + 19507705-19508169 29 3.0
08_02_0786 + 21198247-21198921 29 3.9
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826... 28 6.9
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520... 28 6.9
11_03_0014 - 8965966-8965989,8966788-8966920,8967447-8967529,896... 27 9.1
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 27 9.1
07_01_0496 - 3730822-3731280 27 9.1
06_03_0753 - 24177863-24178021,24178425-24178730,24181204-241814... 27 9.1
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPSTAD 513
++ S LC SGCGFYGNP+T D
Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLD 219
>09_04_0568 + 18591757-18592251
Length = 164
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 454 PMEALCRSGCGFYGNPSTADFAQ 522
P LC + CGF GNP+T + Q
Sbjct: 17 PEITLCANSCGFPGNPATQNLCQ 39
>08_02_1177 + 24946763-24947275
Length = 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 454 PMEALCRSGCGFYGNPSTADFAQ 522
P LC + CGF GNP+T + Q
Sbjct: 17 PEMTLCANSCGFPGNPATNNLCQ 39
>02_04_0078 + 19507705-19508169
Length = 154
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 466 LCRSGCGFYGNPSTAD 513
LC + CGF+G+P+T D
Sbjct: 14 LCANNCGFFGSPATLD 29
>08_02_0786 + 21198247-21198921
Length = 224
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 463 ALCRSGCGFYGNPST 507
ALC SGCGF+G+ T
Sbjct: 79 ALCSSGCGFFGSKET 93
>12_02_0474 +
19482150-19482152,19482205-19482336,19482513-19482602,
19482649-19482708,19482959-19483058,19483137-19483234,
19483351-19483525,19484167-19484270
Length = 253
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 419 HFNNKFQTLH*CLTSDCTKSTL 354
HF+ + TLH C TSDC K L
Sbjct: 165 HFSRPWFTLHPCGTSDCMKLLL 186
>04_04_0383 -
24851496-24851681,24851785-24851882,24851964-24852063,
24852741-24852899
Length = 180
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 419 HFNNKFQTLH*CLTSDCTKSTL 354
HF+ + TLH C TSDC K L
Sbjct: 123 HFSRPWFTLHPCGTSDCMKLLL 144
>11_03_0014 -
8965966-8965989,8966788-8966920,8967447-8967529,
8967690-8967986,8970067-8970165
Length = 211
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 428 VEQWSVNQILWKRFADRAAVSTAIPPQRTLLSLL*GSVKEETTASRDDAVG 580
+++ S +IL + FAD AAV+ + PQ+T+ L E T +R A G
Sbjct: 149 LQEASSAEILLRAFADLAAVAAEMSPQQTVDEFL----ALEATLARSAAAG 195
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 206 TFEGHTVVEKESFEPNKCLSKCAVPSAHKQATPRLCGCS 90
T+E +++ SFE NK LS+ +PS+ + + G S
Sbjct: 32 TYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFS 70
>07_01_0496 - 3730822-3731280
Length = 152
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 436 MERESNPMEALCRSGCGFYGNPST 507
M+ + A+C +GCGF+G+ +T
Sbjct: 7 MQARNGGGAAMCAAGCGFFGSAAT 30
>06_03_0753 -
24177863-24178021,24178425-24178730,24181204-24181475,
24181663-24181696,24181937-24182014,24182373-24182516,
24183064-24183122,24183593-24183723,24186655-24186743
Length = 423
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 538 ASLKQTEQSPLWRDCRRNRSPIGKALP*DLIHAPLFHYN 422
AS+ T +W R R+P G +P DL A L +++
Sbjct: 14 ASVLHTVDDTMWLKLHRRRNPEGYDMPSDLDQALLLYFD 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,169
Number of Sequences: 37544
Number of extensions: 285113
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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