Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20889
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC073131-1|AAH73131.1| 213|Homo sapiens zinc finger, AN1-type d... 35 0.27
BC027707-1|AAH27707.1| 213|Homo sapiens ZFAND5 protein protein. 35 0.27
BC011018-1|AAH11018.1| 213|Homo sapiens zinc finger, AN1-type d... 35 0.27
AL135924-4|CAD13440.1| 213|Homo sapiens zinc finger, AN1-type d... 35 0.27
AL135924-3|CAI16263.1| 211|Homo sapiens zinc finger, AN1-type d... 35 0.27
AF062347-1|AAC42602.1| 213|Homo sapiens zinc finger protein 216... 35 0.27
AF062346-1|AAC42601.1| 213|Homo sapiens zinc finger protein 216... 35 0.27
AF062072-1|AAC61801.1| 213|Homo sapiens zinc finger protein 216... 35 0.27
CR533476-1|CAG38507.1| 208|Homo sapiens AWP1 protein. 33 0.62
BC005283-1|AAH05283.1| 208|Homo sapiens zinc finger, AN1-type d... 33 0.62
AJ251095-1|CAC14876.1| 208|Homo sapiens PRK1-associated protein... 33 0.62
AF261138-1|AAG44674.1| 208|Homo sapiens HT032 protein. 33 0.62
AF061739-1|AAD17528.1| 186|Homo sapiens unknown protein. 33 0.62
DQ230535-1|ABA64475.1| 407|Homo sapiens RAP1 short isoform prot... 32 1.9
DQ230534-1|ABA64474.1| 531|Homo sapiens RAP1 long isoform protein. 32 1.9
DQ230533-1|ABA64473.1| 491|Homo sapiens RAP1 protein. 32 1.9
BT007107-1|AAP35771.1| 491|Homo sapiens putative Rab5 GDP/GTP e... 32 1.9
BC015330-1|AAH15330.1| 491|Homo sapiens RAB guanine nucleotide ... 32 1.9
AK223329-1|BAD97049.1| 491|Homo sapiens RAB guanine nucleotide ... 32 1.9
AK127790-1|BAC87138.1| 708|Homo sapiens protein ( Homo sapiens ... 32 1.9
AJ250042-1|CAB57359.1| 491|Homo sapiens Rab5 GDP/GTP exchange f... 32 1.9
AC027644-1|AAQ93362.1| 491|Homo sapiens unknown protein. 32 1.9
>BC073131-1|AAH73131.1| 213|Homo sapiens zinc finger, AN1-type
domain 5 protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>BC027707-1|AAH27707.1| 213|Homo sapiens ZFAND5 protein protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>BC011018-1|AAH11018.1| 213|Homo sapiens zinc finger, AN1-type
domain 5 protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>AL135924-4|CAD13440.1| 213|Homo sapiens zinc finger, AN1-type
domain 5 protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>AL135924-3|CAI16263.1| 211|Homo sapiens zinc finger, AN1-type
domain 5 protein.
Length = 211
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 56 ETNQTPGPMLCSTGCGFYGNPRT 78
>AF062347-1|AAC42602.1| 213|Homo sapiens zinc finger protein 216
splice variant 2 protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>AF062346-1|AAC42601.1| 213|Homo sapiens zinc finger protein 216
splice variant 1 protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>AF062072-1|AAC61801.1| 213|Homo sapiens zinc finger protein 216
protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.27
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 439 ERESNPMEALCRSGCGFYGNPST 507
E P LC +GCGFYGNP T
Sbjct: 4 ETNQTPGPMLCSTGCGFYGNPRT 26
>CR533476-1|CAG38507.1| 208|Homo sapiens AWP1 protein.
Length = 208
Score = 33.5 bits (73), Expect = 0.62
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 436 MERESNPMEA--LCRSGCGFYGNPST 507
M +E+N + LC +GCGFYGNP T
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRT 26
>BC005283-1|AAH05283.1| 208|Homo sapiens zinc finger, AN1-type
domain 6 protein.
Length = 208
Score = 33.5 bits (73), Expect = 0.62
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 436 MERESNPMEA--LCRSGCGFYGNPST 507
M +E+N + LC +GCGFYGNP T
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRT 26
>AJ251095-1|CAC14876.1| 208|Homo sapiens PRK1-associated protein
AWP1 protein.
Length = 208
Score = 33.5 bits (73), Expect = 0.62
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 436 MERESNPMEA--LCRSGCGFYGNPST 507
M +E+N + LC +GCGFYGNP T
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRT 26
>AF261138-1|AAG44674.1| 208|Homo sapiens HT032 protein.
Length = 208
Score = 33.5 bits (73), Expect = 0.62
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 436 MERESNPMEA--LCRSGCGFYGNPST 507
M +E+N + LC +GCGFYGNP T
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRT 26
>AF061739-1|AAD17528.1| 186|Homo sapiens unknown protein.
Length = 186
Score = 33.5 bits (73), Expect = 0.62
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 436 MERESNPMEA--LCRSGCGFYGNPST 507
M +E+N + LC +GCGFYGNP T
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRT 26
>DQ230535-1|ABA64475.1| 407|Homo sapiens RAP1 short isoform
protein.
Length = 407
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>DQ230534-1|ABA64474.1| 531|Homo sapiens RAP1 long isoform protein.
Length = 531
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>DQ230533-1|ABA64473.1| 491|Homo sapiens RAP1 protein.
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>BT007107-1|AAP35771.1| 491|Homo sapiens putative Rab5 GDP/GTP
exchange factor homologue protein.
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>BC015330-1|AAH15330.1| 491|Homo sapiens RAB guanine nucleotide
exchange factor (GEF) 1 protein.
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>AK223329-1|BAD97049.1| 491|Homo sapiens RAB guanine nucleotide
exchange factor (GEF) 1 variant protein.
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>AK127790-1|BAC87138.1| 708|Homo sapiens protein ( Homo sapiens
cDNA FLJ45891 fis, clone OCBBF3022827, highly similar
to Homo sapiens Rab5 GDP/GTP exchange factor (RABEX5).
).
Length = 708
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 154 DLLCKKGCGYYGNPAWQGF 172
>AJ250042-1|CAB57359.1| 491|Homo sapiens Rab5 GDP/GTP exchange
factor homologue protein.
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
>AC027644-1|AAQ93362.1| 491|Homo sapiens unknown protein.
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 460 EALCRSGCGFYGNPSTADF 516
+ LC+ GCG+YGNP+ F
Sbjct: 16 DLLCKKGCGYYGNPAWQGF 34
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,807,950
Number of Sequences: 237096
Number of extensions: 1575463
Number of successful extensions: 2870
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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