Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20889
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel ...    28   4.7  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    28   4.7  
AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.      28   4.7  
U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    28   6.2  
AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 181 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQN 53
           K  +SN +T +  ++Q+L  T    HV   V+ ++ +HN WLQN
Sbjct: 71  KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQN 113


>Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical
           protein F22D6.2 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 477 GLRFLRQSLHSGLCSVCFKEALKKKQ 554
           G  F   S   G CS CFK  LK++Q
Sbjct: 17  GCGFFGASATEGYCSQCFKNTLKRQQ 42


>U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform a protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -2

Query: 117 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTID 4
           S +T++ + S+S+  +MN     N NS +++P+TY++D
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLD 234


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -2

Query: 117 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTID 4
           S +T++ + S+S+  +MN     N NS +++P+TY++D
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLD 234


>AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -2

Query: 117 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTID 4
           S +T++ + S+S+  +MN     N NS +++P+TY++D
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLD 234


>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 536 SVKEETTASRDDAVGCVCSLS*RP 607
           S+K+E +AS D+A   +C +S RP
Sbjct: 445 SMKDEVSASLDEATEIICEISGRP 468


>AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical
           protein Y39A1A.5 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 460 EALCRSGCGFYGNP 501
           + LC +GCGFYG P
Sbjct: 48  DLLCVNGCGFYGTP 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,128
Number of Sequences: 27780
Number of extensions: 260826
Number of successful extensions: 646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)