Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20887
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   128   7e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   124   2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.14 
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    27   2.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.8  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   6.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.8  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   9.0  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  128 bits (310), Expect = 7e-31
 Identities = 62/84 (73%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 VISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 435
           VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I 
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIK 138

Query: 436 EASYVNIPVIALCNTDSPLRFVDI 507
           EAS+VNIPVIALC+TDS L  VD+
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDV 162



 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +2

Query: 50  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVLAARAVV 229
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG  +INL + WEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 230 AIENPAD 250
            IENPAD
Sbjct: 70  TIENPAD 76



 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 35/56 (62%), Positives = 43/56 (76%)
 Frame = +3

Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 677
           IP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 164 IPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  124 bits (298), Expect = 2e-29
 Identities = 59/84 (70%), Positives = 67/84 (79%)
 Frame = +1

Query: 256 VISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 435
           V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I 
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIK 137

Query: 436 EASYVNIPVIALCNTDSPLRFVDI 507
           EAS+VNIPVIALC+TDS L  VDI
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDI 161



 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 35/71 (49%), Positives = 53/71 (74%)
 Frame = +2

Query: 38  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVLAA 217
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG  ++NL + WEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 218 RAVVAIENPAD 250
           R +  IENPAD
Sbjct: 65  RVIATIENPAD 75



 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 36/58 (62%), Positives = 44/58 (75%)
 Frame = +3

Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 683
           IP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 163 IPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 385 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 501
           P L+++L+P ++     EA   ++P I + +TD+  R V
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMV 218


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = -2

Query: 289 QHADRRAVMR*RHISGVLDGYDSTSSQNKFFPGTTQVDHTGTISTSFVDIGLHLEVNIFC 110
           +H D   + +   I+G++  YD+     +F   + +V +     + F  I + ++V +F 
Sbjct: 31  EHMDSMILSKLPRINGIVLAYDNI----RFLEKSAKVMY----DSPFSFIWVRVDVLVFS 82

Query: 109 PKMGGCSKHFGDIFLVEGEHV 47
           PK G C +  G I LV   H+
Sbjct: 83  PKKGDCLE--GKINLVSPSHI 101


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 540 IGLMWWLLAREVLRLRGVLPRDQRWD 617
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 595 FPVTSAGML--WLICSSTVTLKKVKRM 669
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 435 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 268
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 513 GYNVHKS*WGVCVAQSNHR-NVDI 445
           GY VH S WG  + ++++R N D+
Sbjct: 744 GYEVHNSSWGYLIERASYRFNYDL 767


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 469 LCNTDSPLRFVDIVSHATPSL 531
           LC TDS  RF+ I+S+ T  L
Sbjct: 236 LCYTDSGKRFLPIISNVTAEL 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,222
Number of Sequences: 5004
Number of extensions: 71731
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)