Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20887
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.59 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.59 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 622 TTSQRWSRGSTPRSLNTSRANNHHIKP 542
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 622 TTSQRWSRGSTPRSLNTSRANNHHIKP 542
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 633 TNQPQHPSAGHGEAHHEASTLH 568
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 585 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 683
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 585 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 683
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 400 VLDPAQDHQPITEASYVNIPVIALCNTDSP 489
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 509 YPMQHQVFPLYWFDVVVV 562
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 509 YPMQHQVFPLYWFDVVVV 562
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = -2

Query: 244 GVLDGYDSTSSQNKFFPGTTQVDHTGTISTSFVDIGLHLEVNIFCPKMG 98
           G +  YD T    K       +  +   S S V +   LEVN    ++G
Sbjct: 277 GHMISYDDTDGDGKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHISARVG 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,457
Number of Sequences: 438
Number of extensions: 5105
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)