Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20887
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   130   1e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   124   5e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   124   5e-29
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    36   0.039
At2g22340.1 68415.m02651 hypothetical protein                          33   0.28 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.0  
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila...    28   6.0  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    28   6.0  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   7.9  
At1g13470.1 68414.m01578 expressed protein                             28   7.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  130 bits (313), Expect = 1e-30
 Identities = 59/89 (66%), Positives = 71/89 (79%)
 Frame = +1

Query: 241 PR*CVVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 420
           P+  +V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 421 HQPITEASYVNIPVIALCNTDSPLRFVDI 507
           HQPI E +  NIP+IA C+TDSP+RFVDI
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDI 163



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/66 (57%), Positives = 46/66 (69%)
 Frame = +2

Query: 53  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVLAARAVVA 232
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG  + NL + WEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 233 IENPAD 250
           IENP D
Sbjct: 72  IENPQD 77



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 35/61 (57%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = +3

Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE-KDEQQAKE 686
           IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ +DE +A  
Sbjct: 165 IPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGP 224

Query: 687 Q 689
           Q
Sbjct: 225 Q 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  124 bits (300), Expect = 5e-29
 Identities = 57/89 (64%), Positives = 68/89 (76%)
 Frame = +1

Query: 241 PR*CVVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 420
           P+  +V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 421 HQPITEASYVNIPVIALCNTDSPLRFVDI 507
           HQPI E +  NIP IA C+TDSP+ FVDI
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +2

Query: 65  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVLAARAVVAIENP 244
           E D+  ML+A  HLG +N N+QME YV+KRR DG  +INL + W+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 245 AD 250
            D
Sbjct: 77  KD 78



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 32/59 (54%), Positives = 45/59 (76%)
 Frame = +3

Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 686
           IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++++  +  E
Sbjct: 166 IPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  124 bits (300), Expect = 5e-29
 Identities = 57/89 (64%), Positives = 68/89 (76%)
 Frame = +1

Query: 241 PR*CVVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 420
           P+  +V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 421 HQPITEASYVNIPVIALCNTDSPLRFVDI 507
           HQPI E +  NIP IA C+TDSP+ FVDI
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +2

Query: 65  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVLAARAVVAIENP 244
           E D+  ML+A  HLG +N N+QME YV+KRR DG  +INL + W+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 245 AD 250
            D
Sbjct: 77  KD 78



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = +3

Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 629
           IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 166 IPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 385 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIVSHATPS 528
           P  ++V D  +    I EAS + IPV+A+ + + PL F + +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 103 SWGRKC*LPDGDLCLQTTC*WYPCDQLASCLGKTCSGCSC 222
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 340 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 441
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990]; contains Pfam profile PF02738 Aldehyde
           oxidase and xanthine dehydrogenase, molybdopterin
           binding domain
          Length = 1361

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -1

Query: 629 INHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDTMSTNLSGESVLHKAITGML 450
           ++HN+    +   T  P H +  QP  + +R+G+         T++ G S +H +    +
Sbjct: 553 VSHNVNNANSAIETFPPSHMSAVQPVPRLSRIGKQDYETVKQGTSV-GSSEVHLSARMQV 611

Query: 449 TYEA 438
           T EA
Sbjct: 612 TGEA 615


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = -2

Query: 292 VQHADRRAVMR*RHISGVLDGYDSTSSQNKFFPGTTQVDHTGTISTSFVDIGLHL 128
           ++H D ++V++  H S  L+  + TSS ++    T +V+H+ TI ++  DI  HL
Sbjct: 349 IKHLDHKSVLK--HPSMQLNILEVTSSLSE----TAKVEHSATIVSAISDIMRHL 397


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 666 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 544
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


>At1g13470.1 68414.m01578 expressed protein
          Length = 379

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 492 KICGHCIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 617
           K+ G  I  NTK     G+ W+ +A + + LR V+    +W+
Sbjct: 271 KLEGQEIGKNTKRVDENGVFWFAVAEKRIGLRSVVMERMKWE 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,855
Number of Sequences: 28952
Number of extensions: 403740
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)