Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20886
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    45   5e-06
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.36 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   2.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   3.4  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    26   3.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   4.5  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    25   4.5  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   5.9  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    25   5.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   5.9  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   5.9  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    25   5.9  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   7.8  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   7.8  

>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +3

Query: 15  IVDSATHVALYTFE--ENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPVSKG 188
           I+D A+HVA+Y F+    +W KT+IEG  F+  ++       VI+NR +  NL   ++  
Sbjct: 26  IIDIASHVAVYQFDVGSQKWLKTSIEGTFFLV-KDQRARVGYVILNRNSPENLYLFINHP 84

Query: 189 IELQLKEPFLLYRNAKCRIYGI 254
             + L + +L++R     + G+
Sbjct: 85  SNVHLVDRYLIHRTENQHVVGL 106


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 281 RVATKLNTLVKESIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVAGT 460
           R  T      KE+  + +  T   N+  + S  S      FS  S ++D F+SN+  + +
Sbjct: 30  RTGTSFFMYQKEAFYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSS 89

Query: 461 KSES 472
            S S
Sbjct: 90  LSRS 93


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 266 KDECVRVATKLNTLVKESIKQSQGETMPQN---SVYNSSTTSTQSIDIFSMLSKAQDDFN 436
           ++E V    ++    K S+K+  GE  PQ+   S   S +T+T+S       + A+D  +
Sbjct: 244 EEETVDTVEEIADEEKHSVKEESGEASPQSSQQSTITSISTTTRSTRKAKREAAAEDKAD 303

Query: 437 SNKGVAGTKSES 472
               VA   S++
Sbjct: 304 LPAAVAPKPSKT 315


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 172 SIRLLVFSLFIITKLWYGS--PFLLYTNKAPSMLVFSHSF 59
           SI L + S F++ K W  S  PFL+Y   APS+ +    F
Sbjct: 467 SILLSIISSFLV-KHWRESKVPFLVYFLSAPSLAILYSCF 505


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 217 KNGSFNCSSIPLDTGSIRLLVFSLFIITKLWYGSPFLLYTNKA 89
           K G  +  ++P  +          FI T+ W G PFLL   KA
Sbjct: 300 KPGYLDDETVPKGSRCPTYSAIPCFIDTERWRGVPFLLKAGKA 342


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 269 DECVRVATKLNTLVKESIKQSQGETMPQNSV 361
           DE  +    L+TLV + +K+S  E  PQ S+
Sbjct: 142 DEPPKALEVLHTLVAQKLKKSIEEVSPQKSI 172


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 329 SQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFN 436
           S G  + +++   ++  S +  DIFSML+  +DD N
Sbjct: 42  SNGSYLRESAQNPANLGSQKGSDIFSMLANQKDDSN 77


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 129 CGMVHHFYCTQTKHPQCW 76
           CG V  FY +QT  P+ W
Sbjct: 103 CGAVFAFYISQTPFPKGW 120


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 221 IS*RQVPHLRYRFYDKDECVRVATKLNTLVKESIKQSQGETMPQNSVYNSSTTSTQ 388
           I+ RQ+ H   R  +   C R+  K NTL KE   +   E   +N  Y+S   + Q
Sbjct: 30  IAIRQLSHGSLR--NSRSC-RIDAKSNTLTKEIFPKINNEFKIKNRFYSSKLANDQ 82


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 269 DECVRV-ATKLNTLVKESIKQSQGETMP-QNSVYNSSTTSTQSIDIFSMLSKAQDD 430
           DE  R+ A K   L+++  K    + +  ++S+ +SST S+QS  + ++  ++QDD
Sbjct: 126 DESARLWAEKRRFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQDD 181


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 160 LVFSLFIITKLWYGSPFL 107
           + F L  +  LWYGSP++
Sbjct: 195 ITFPLVTLEGLWYGSPYI 212


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +2

Query: 305 LVKESIKQSQGETM------PQNSVYNSSTTSTQS 391
           LVK+ ++  +G T       PQNSVY S     QS
Sbjct: 511 LVKKKVRDKKGSTQQLPTSSPQNSVYGSIKKDAQS 545


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 139 ITKLWYGSPFLLYTNKAPSMLV-FSHSFSSN 50
           +TKL +G+  LL+TN  P  ++ +  SF  N
Sbjct: 92  LTKLLHGAVGLLFTNSKPDEVIGYFESFVQN 122


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 317 SIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNS 439
           S+  SQG  MP  ++Y+SS  +  + +I S    A +  NS
Sbjct: 127 SLPASQGGGMPSPAIYSSSMATNLNKNINSTSVPAYNFHNS 167


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 3   YAREIVDSATHVALYTFEENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNL 167
           YA+ + D   HVA YT   NE      +  + +Y       +SL  +N  N  +L
Sbjct: 97  YAKGMDDIMKHVATYTATMNERMNACHKEYIKMYEALASERNSLYKINEQNVQSL 151


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -2

Query: 235 LALRYSKNGSFNCSSIPLDTGSIRLLVFSLFIITKLWYGSPFLLYTNKAPSMLVFSHSF 59
           L++R+S   +   + + + +  I     +L   +KL +G  + +YT+K  + LVF+  F
Sbjct: 153 LSVRFSVKNTPAQAIVKIYSKDIEFYEATLAFASKL-HGMRWFMYTHKVSAFLVFTSLF 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,364
Number of Sequences: 5004
Number of extensions: 37712
Number of successful extensions: 111
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)