Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20886
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278...    84   5e-17
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835...    83   8e-17
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254...    83   1e-16
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565...    48   4e-06
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     31   0.63 
01_06_1333 + 36385411-36385608,36385986-36386123                       29   2.5  
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    28   3.3  

>12_01_0366 +
           2779754-2779882,2780007-2780047,2780163-2780212,
           2780824-2780968,2781298-2781354,2781448-2781571,
           2781798-2782259,2782493-2782564
          Length = 359

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
 Frame = +3

Query: 12  EIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPVSK 185
           +I+ +A HV LY F  E N+W + ++EG+LFV  RN +P    ++MNR NT+NL+E +  
Sbjct: 23  DILITAAHVTLYDFNIELNQWSRKDVEGSLFVVKRNKQPRFQFIVMNRRNTDNLVEDLLS 82

Query: 186 GIELQLKEPFLLYRNAKCRIYGIGF 260
             E +L+ P+LLYRNA   + GI F
Sbjct: 83  DFEFELQPPYLLYRNAAQEVNGIWF 107


>07_01_0989 +
           8348706-8348882,8348988-8349028,8350071-8350120,
           8350502-8350646,8351570-8351626,8352141-8352261,
           8352436-8352945,8353242-8353289
          Length = 382

 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
 Frame = +3

Query: 12  EIVDSATHVALYTFEEN--EWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPVSK 185
           +I+ +A HV LY F+ N  +W + ++EG+LFV  RN +P    V+MNR NT+NL+E +  
Sbjct: 39  DILITAGHVTLYDFDTNLNQWSRKDVEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLG 98

Query: 186 GIELQLKEPFLLYRNAKCRIYGIGFMIRTSACE 284
             E QL+ P+++YRNA   + GI F   +  CE
Sbjct: 99  DFEYQLQVPYIMYRNAAQEVIGIWF-YNSQECE 130


>11_01_0342 +
           2548147-2548275,2548385-2548425,2548521-2548570,
           2548830-2548974,2549854-2549859,2550122-2550245,
           2550422-2550877,2550960-2551013
          Length = 334

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
 Frame = +3

Query: 12  EIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPVSK 185
           +I+ +A HV LY F  + N+W + ++EG+LFV  RN +P    ++MNR NT+NL+E +  
Sbjct: 23  DILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTDNLVEDLLS 82

Query: 186 GIELQLKEPFLLYRNAKCRIYGIGF 260
             E +L+ P+LLYRNA   + GI F
Sbjct: 83  DFEYELQPPYLLYRNAAQEVNGIWF 107


>03_06_0595 -
           34955345-34955464,34955495-34956256,34956384-34956507,
           34957111-34957167,34958222-34958366,34958860-34958909,
           34959366-34959514,34959955-34960146
          Length = 532

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = +3

Query: 111 NGEPYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIGF 260
           N +P    ++MNR NT NL E +  G E Q++ P+++Y NA   I GI F
Sbjct: 115 NTQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWF 164


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +2

Query: 263  DKDECVRVATKLNTLVKESIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSN 442
            D D+C    ++ +  VK + KQ  G  +  NS   SSTTS +    F++  K +D   ++
Sbjct: 889  DTDKCSHPPSRGDDGVKSNAKQPIGFKIDTNSNIKSSTTS-EYRSAFTVRGKVEDGCTTS 947

Query: 443  KGVAGT 460
              V  T
Sbjct: 948  SDVGST 953


>01_06_1333 + 36385411-36385608,36385986-36386123
          Length = 111

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 IELQLKEPFLLYRNAKCRIYGIGF 260
           I+L LK+ F  Y    CR++G+GF
Sbjct: 84  IDLPLKKKFSCYLMQDCRLFGLGF 107


>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
            7724751-7725072,7725183-7725661,7726157-7726430,
            7726598-7726884,7726966-7727388,7727545-7727890,
            7728011-7728328,7729817-7731081
          Length = 1803

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 128  VVWFTISTVHKQSTLN-VGFLPFVLFKCVKGNVGST 24
            ++ FT S  +K  +LN +GFL F   K  +G++GS+
Sbjct: 1285 LIAFTNSRFNKDISLNAIGFLRFCAAKLAEGDIGSS 1320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,403
Number of Sequences: 37544
Number of extensions: 216826
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)