Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20886
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    50   6e-07
U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    27   9.1  
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    27   9.1  

>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 6   AREIVDSATHVALYTFE--ENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPV 179
           A +I+D     A+Y  +    EW ++N EG  FVY R   PY S +I NR + ++ IEP+
Sbjct: 27  ASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFVYQRADRPYFSFLIANRNDPSDFIEPL 86

Query: 180 SKGIELQLKEPFLLYRNAKCRIYGIGF 260
           +    L+    F+ +      I  + F
Sbjct: 87  TLNHILRHDGNFIYFYKDLASIQALWF 113


>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 116 TISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNF 12
           T+S +H+ S  + G + FV+F  ++  VG T+  F
Sbjct: 168 TVSMIHRNSNFDAGSISFVIFPSLE--VGLTMMKF 200


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 116 TISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNF 12
           T+S +H+ S  + G + FV+F  ++  VG T+  F
Sbjct: 168 TVSMIHRNSNFDAGSISFVIFPSLE--VGLTMMKF 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,998
Number of Sequences: 27780
Number of extensions: 209617
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)