Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20885
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 80 3e-16
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 4e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.010
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.023
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.031
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.031
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.031
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.041
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.054
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.054
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.094
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.094
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.12
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.29
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.29
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.29
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.50
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.50
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.66
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.2
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 28 1.5
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.0
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.0
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.7
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 3.5
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 4.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 6.2
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 8.2
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 25 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPRE 241
Query: 433 -----GKIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGG+ + +++E RNFF++FG
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFG 271
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+L+ + DK + +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 273 VLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 74 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 250
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 251 HLE 259
+ E
Sbjct: 182 YFE 184
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G + + D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/55 (30%), Positives = 35/55 (63%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
+L+ + D T + +GF F+TF++ + VN+++ + + + GK +D KRA P+ +
Sbjct: 189 VLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREE 242
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+F+GGL+ E +DD +R++F +FG
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFG 187
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 390
+FG G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 408
F YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V+
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 391 DIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 381
FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 290 FGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 408
F + G + SI V D T RS G+A++ F E +K + +T+ + D
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
P K G +F+ L I + + + FS FG
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 192
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 217 ELGDHR*GAP*SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
E+ D R A F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 374 EVDDERLKA--EFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKAK 423
F G++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ +
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELTA 170
Query: 424 ARHGK 438
GK
Sbjct: 171 GGGGK 175
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 519 VEMPFDKTKNQRKGFCFITF 578
V +P DKT ++KG+ F+ F
Sbjct: 121 VRIPTDKTSGRQKGYAFVEF 140
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 342
F YG IE I V + TG+S G+AF+VF+
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.031
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 387
FG G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 248 FGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 98 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 253
I ++ +G S ++ ++ LFVG L +ETTD +L++H
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEH 247
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.5 bits (73), Expect = 0.031
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 354
F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
I++G L ++++D+I FSEFG
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFG 55
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.031
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
P+ A + +FVGGLS +S++E++ F FG
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFG 327
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVF 339
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.041
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 262 YGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 429
+GE + SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 388 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
+NN K+ P + + I+VG + S +SD+EI FS++G
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYG 41
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 417
F +G I S + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.054
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 405
F G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.094
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 363
F +G+I S V D TG S +AFI F ES++K
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 358 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FG
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFG 125
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 351
F +G + + + +P T SRGF F+ F E
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 379 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
E TI K + K + + G ++VG L + ++R +FS+FG
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFG 129
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 516 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDV 650
+V MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 351 QVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
+I+VGGLSS I ++ + FS FG
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFG 29
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF 339
F +G I+ + + D TGR++GFAF+ +
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 211 WAELGDHR*GAP*SFGAYGEIESINVKTDPNT 306
WA G + +P + Y E+ES++VK++ +T
Sbjct: 157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDT 188
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.50
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDPKKAKAR 429
F +G I+S + + P+T S+G+ F+ F P E++ + K++ A+ R
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Query: 430 HGK 438
+
Sbjct: 501 EDR 503
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 513 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRATP 665
+ V M +D+ + +G C + FE+ Q D KT + T + G E+ + + +P
Sbjct: 111 IRVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQISKKSP 161
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 430 HGKIFVGGLSSEISDDEIRNFFSEF 504
H ++FVG L ++++D+ + FSE+
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEY 53
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 265 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 444
GE+E V +P + ++F K+ A +++ +++DP K A +
Sbjct: 351 GEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVSALQQMLI 410
Query: 445 VGGLS 459
GG++
Sbjct: 411 AGGVN 415
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 316 RGFAFIVFKAPESIDKVMAAGEHTINNKK 402
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+FVGGL+S +S+ +++ F FG
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFG 321
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 399
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 207 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 94
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 349 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGIS*KWRC 528
+ ++ + A H + P + +A ++FVG LS+ EIR+ F G K
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 529 PLTKQRTKER 558
P + R R
Sbjct: 76 PFRRVRRGTR 85
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 146 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHLE 259
D+ H SAE P + DD ++FVG LS T E+R E
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFE 65
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 403 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
+ P K +F+GG++ + + +R+ F FG
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFG 430
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 501 IWNILE-VEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE--VDVKR 656
I+ +++ + MP K KG+C+I + +Q N + K + G+E V +KR
Sbjct: 121 IYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 4.7
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = -1
Query: 546 SLFCQRASPLLRYSKFTEEVSD--FII*DFTAESSDKNLPMSCFSLLWVYFLVVDGVFTS 373
S+ QR + S T + D + I +++ E + + L M C +++ F +F S
Sbjct: 1161 SIVQQRVQQGSKVSALTALIPDVTYNISNYSDEETTQ-LAMDCLAVMAKRFSASPELFIS 1219
Query: 372 SHDLVY*LWGLKHNEGKPS*SACVWICLYINTL 274
++V +GLK++ SA V I + NTL
Sbjct: 1220 PIEVVSGPYGLKNSARDVQVSAIVCITVLTNTL 1252
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
F G + + D +GRS+G A++ F +S+ +A
Sbjct: 260 FEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 423 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 262
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+F+G L + I++DEIR FG
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFG 230
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = -1
Query: 516 LRYSKFTEEVSDFII*DFTAESSDKNLPMSCFSLLWVYFLVVDGVFTS 373
L+Y++ + SDF++ DFT + ++ L++++ ++D +F S
Sbjct: 364 LKYTRKSVAESDFVVTDFTHRG------YTGYAFLYIFYGMLDAIFQS 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,693
Number of Sequences: 5004
Number of extensions: 59471
Number of successful extensions: 252
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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