Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20884
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.33
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 30 0.43
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 28 1.7
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 28 1.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.3
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 5.3
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 7.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 7.0
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 9.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.3
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 479 SQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFA 309
S T T + T SS Y+S SS+++P S S F+S SPT+ F+
Sbjct: 488 SNTTVTFTGTGTGSATATSSSPYYSNSSIIVPTTVSTSGSVSSFSSS--PSPTSSFS 542
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 29.9 bits (64), Expect = 0.43
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 469 VAWLCMLAGAIAVMYALPSAARPNPGHGTNSVLWSDWSWSMPSNHKIY--NRIWNC*RHS 642
+ W+ +L + +L AA+ NPG + W++ S P ++KI+ N+ C +
Sbjct: 109 IDWISVLTSVLLPYISLYIAAKSNPGK-IDLKNWNEASRRFPYDYKIFFPNKCSTC-KFE 166
Query: 643 KFRACSSKCRLTN 681
K A S CRL N
Sbjct: 167 K-PARSKHCRLCN 178
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 92 EPRKNRLSIDGGQ---VKEDEHVATYKAIPESDTEFRSSKTNLGKSKEKISADGAEENY* 262
E + ++IDG + + +E V T P + + KSK+K SAD A E
Sbjct: 429 EKALSSVNIDGDEEVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVK 488
Query: 263 RRKTRPKS 286
+ K + KS
Sbjct: 489 KSKKKKKS 496
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +1
Query: 220 EGEDICRRRRGELLKKEDEAKIITRVD----MSDAKYVVGDHRNGDAKIELDANKRQFTG 387
E +IC + + + E K + ++ +++A V +H+ E ++K + +G
Sbjct: 53 EANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG 112
Query: 388 MTREEVLKYADD 423
++R+E+L+ ++
Sbjct: 113 VSRDELLRQQEE 124
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 211 EVRFGRPEFCIRFWYSLVGCNVF-ILFHLPSINRET 107
EV G P W+SL GC VF LF P N ET
Sbjct: 867 EVILGNPGIKASDWWSL-GCVVFEFLFGYPPFNAET 901
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 216 LPRFVLDDRNSVSDSGIAL*VATCSSSFTCPPSIERRFFRGSD 88
L F D +SD AL V T +++FTCP S + +G D
Sbjct: 298 LGNFSSIDMPDLSDVKGALTVETKATNFTCPWSNDDSVIKGDD 340
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = -1
Query: 602 WFDGIDQLQSDQRTEFVPCPGFGRAALGSAYMTAIAPASMHSQATQNNTNSDQRKFTQKG 423
W DG++ + TE+ P + A GS A P NT R+ + G
Sbjct: 84 WSDGVETIFPYSYTEYQPSTTYTSAPAGSIGYAASIP----------NTG---RELMESG 130
Query: 422 SSAYFSTSSLVI 387
S FS SSL+I
Sbjct: 131 SPVRFSKSSLLI 142
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 89 TSLIVYYT-LKTSFSLRESSPFTINHDLQ 6
TS YYT L T FSL ES PF +Q
Sbjct: 607 TSPNTYYTVLDTGFSLSESVPFATKEWIQ 635
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 367 NKRQFTGMTREEVLKYADDPFWVNLRWSLFVL 462
N G+TREE+ YA+ + WS++ +
Sbjct: 318 NNNPDDGLTREEMAPYAERVLVYPVNWSVYTM 349
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 122 HQSRDGFSVAPTSLIVYYTLKTSFSLRESSPFTIN 18
H S + P+S + TL +S +SS FT++
Sbjct: 475 HSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVS 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,428
Number of Sequences: 5004
Number of extensions: 67922
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -