BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20884 (785 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24) 31 1.4 SB_29795| Best HMM Match : ResIII (HMM E-Value=0.16) 31 1.4 SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4 SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 2.4 SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 4.3 SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_52263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6 SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 29 5.6 SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011) 28 7.5 SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) 28 7.5 SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82) 28 9.9 SB_23498| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9 SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12) 28 9.9 SB_6064| Best HMM Match : DDHD (HMM E-Value=8e-05) 28 9.9 >SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24) Length = 1001 Score = 30.7 bits (66), Expect = 1.4 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = +2 Query: 92 EPRKNRLSIDGGQVKEDEHVATYKAIPESDTEFRSSKTNLGKSKEKISADGAEENY*RRK 271 EP++NR ID VK + H ++++ P S T R K ++ K + D +E + Sbjct: 924 EPKENRAPIDVTLVKTENHNPSFQS-PLSPT--RGKKPSVKKKGKVPKKDKTQEKEVEPR 980 Query: 272 TRPKS*PVW 298 PKS W Sbjct: 981 ENPKSPDEW 989 >SB_29795| Best HMM Match : ResIII (HMM E-Value=0.16) Length = 818 Score = 30.7 bits (66), Expect = 1.4 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 15/100 (15%) Frame = +1 Query: 220 EGEDICRRRRGELLKKEDEAKIITRVDMSDAKYVVG-----------DHRNGDAKIEL-D 363 EG D+ R G+ + DE+ I+ R D +A Y+ +H +G I+ D Sbjct: 293 EGRDLAVRFVGKCARHGDESSIVVR-DREEAAYLTNLLAGTDHLLNFEHADGAHLIQYKD 351 Query: 364 ANKRQFTGMTREEVLKYADDPF---WVNLRWSLFVLFWVA 474 A +R + RE+VL+ D W R + F ++ VA Sbjct: 352 ALRRMLRRIPREDVLRVCTDAIYAQWCKARGAKFEVWRVA 391 >SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1049 Score = 30.7 bits (66), Expect = 1.4 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = -3 Query: 462 QHEQRPTQVHPERIVSI-LQYLLSRHPSELPFISIEFNLRVTIPVVPDDI 316 Q+ + T V P+R +S+ L YL+++ P + PF L V++PV D + Sbjct: 301 QNPRLRTSVRPKRPLSVMLSYLMNKWPVKSPFTGEAQELCVSVPVGFDSL 350 >SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) Length = 1079 Score = 29.9 bits (64), Expect = 2.4 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = +1 Query: 202 NEPRQIEGEDICRRRRGELLKKEDEAKIITRVDMSDAKYVVGDHRNGDAK---IELDANK 372 N+PRQ G RRR + +K ++K + ++ +HR + K E+DA K Sbjct: 742 NDPRQNRGRHHHRRRHNKKNRKHRKSK---KNKNHRRRHSAHEHRKDNDKEKIFEMDAKK 798 Query: 373 RQFTGMTREE 402 Q G T +E Sbjct: 799 EQENGNTNDE 808 >SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3213 Score = 29.1 bits (62), Expect = 4.3 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 22 IVKGLLSRSEKLVLRV*YTINDVGATEKPSLD*W 123 +V+ LL E+LVLR Y D+GA + L+ W Sbjct: 2136 LVQALLETGEQLVLRGHYAERDIGAKSQMLLELW 2169 >SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) Length = 300 Score = 29.1 bits (62), Expect = 4.3 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%) Frame = +2 Query: 446 GRCSCCSGWPG--CACSPG 496 G C C GW G C CSPG Sbjct: 245 GTCQCKPGWTGIDCECSPG 263 >SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 123 Score = 29.1 bits (62), Expect = 4.3 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 Query: 449 RCSCCSGWPGCACSPG 496 RC+C SGW G +C G Sbjct: 68 RCNCMSGWQGLSCEVG 83 >SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1822 Score = 29.1 bits (62), Expect = 4.3 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = -2 Query: 775 SSGSINNHSYSDLLNFVEQNFEFVQCVTFVEHS*VGTWTNTP 650 +SGSI NH + +++FV+ + + + V H +++ TP Sbjct: 379 ASGSIRNHQWPHIIDFVKSTVDGFEILESVTHVGAISYSTTP 420 >SB_52263| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1024 Score = 29.1 bits (62), Expect = 4.3 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%) Frame = +1 Query: 220 EGEDICRRRRGELLKKEDEAKIITRVDMSDAKYVVG-----------DHRNGDAKIEL-D 363 EG D+ R G+ + DE+ I+ R D +A Y+ +H +G I+ D Sbjct: 531 EGRDLAVRYVGKCARHGDESSIVVR-DREEAAYLTNLLAGTDHLLNFEHADGAHLIQYKD 589 Query: 364 ANKRQFTGMTREEVLKYADDPFW 432 A +R + RE+VL+ D + Sbjct: 590 ALRRMLRRIPREDVLRVCTDAIY 612 >SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 730 Score = 28.7 bits (61), Expect = 5.6 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +2 Query: 446 GRCSCCSGWPGCACS 490 GRC C GW G ACS Sbjct: 374 GRCDCKPGWYGSACS 388 >SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) Length = 960 Score = 28.7 bits (61), Expect = 5.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +2 Query: 446 GRCSCCSGWPGCACS 490 GRCSC +GW G +C+ Sbjct: 685 GRCSCGTGWTGPSCN 699 >SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011) Length = 521 Score = 28.3 bits (60), Expect = 7.5 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = +1 Query: 541 PGHGTNSVLWSDWSWSMPSNHKIYNRIWNC*RHSKFRACSSKCRLTNARQT*HTGRIQNS 720 P H N + W +W + + Y N +H F A +S T+ R T Q S Sbjct: 356 PLHAVNGLEWKEWMYCPTVDKSNYWPAINTSQHEAFEALASV--NTDQRST-QVNTDQRS 412 Query: 721 VQQN*EDRS 747 +Q N + RS Sbjct: 413 IQVNTDKRS 421 >SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) Length = 338 Score = 28.3 bits (60), Expect = 7.5 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = +2 Query: 449 RCSCCSGWPGCACSPG--LLQSCTRSQVRPAR 538 RC C G+ G AC G L T S V+P + Sbjct: 143 RCECPQGYTGAACETGWRLKNPITSSDVKPEK 174 >SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82) Length = 1642 Score = 27.9 bits (59), Expect = 9.9 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +1 Query: 403 VLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVMYALPSAARPNPGH 549 V+ A P W L ++A+L LA +A A P+A P P + Sbjct: 12 VIAAAKPPVWKASHEQLLPALYIAFLINLAKNVAAEGAEPAAQEPKPAY 60 >SB_23498| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 661 Score = 27.9 bits (59), Expect = 9.9 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +1 Query: 205 EPRQIEGEDICRRRRGELLKKEDEAKIITRVDMSDAKYV 321 +P+ EG D+ R G+ ++ DE+ I+ R D +A Y+ Sbjct: 427 DPQYPEGRDLAVRFVGKCARRGDESSIVVR-DREEAAYL 464 >SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12) Length = 573 Score = 27.9 bits (59), Expect = 9.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 410 FSTSSLVIPVNCRLLASSSIFASPFLW 330 F L VNCR ++S ++F+ PF W Sbjct: 331 FILMQLFNEVNCRRVSSRNVFSGPFDW 357 >SB_6064| Best HMM Match : DDHD (HMM E-Value=8e-05) Length = 295 Score = 27.9 bits (59), Expect = 9.9 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +1 Query: 292 RVDMSDAKYVVGD-HRNGDAKIELDANKRQFTGMTREEVLKYA 417 RV++S A+ V + ++IE D N+R G T E+V +YA Sbjct: 140 RVELSKARSKVMELEAKLKSQIEFDQNRRGENGSTAEDVCQYA 182 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,943,254 Number of Sequences: 59808 Number of extensions: 563621 Number of successful extensions: 1935 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1932 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2155861620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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