Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20884
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    48   6e-06
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    32   0.40 
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    31   1.2  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    29   5.0  
Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   6.6  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U39997-3|AAK68389.1|  498|Caenorhabditis elegans Human daz (dele...    28   8.7  
AB025253-1|BAA88577.1|  499|Caenorhabditis elegans DAZ-1 protein.      28   8.7  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = +1

Query: 385 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVMYALPSAA 531
           G+T+E++ KY +DPFW  +R  LFVLFW+AW+ M AGAIA++   P  A
Sbjct: 43  GLTKEQLEKYRNDPFWKPVRTILFVLFWLAWVLMFAGAIAIVVLSPKCA 91


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +1

Query: 385 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVMYALPSAA-RPNPGHGTNS 561
           G++ +E+ ++ +DP W  +R  LFVLFW+ WL + A AI ++   P+   R  P     +
Sbjct: 78  GLSEQELEQFRNDPCWKFIRTVLFVLFWLIWLALFAVAILLVCFSPTCVLRAKPNWWQTA 137

Query: 562 VLWSDW 579
           V +  W
Sbjct: 138 VAYHVW 143


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 385 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVM 510
           G + +E+    ++P W   R++   +FW  W  +LAG+I ++
Sbjct: 35  GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILII 76


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 244 AVGRYLLLRFAEVRFGRPEFCIRFWYSLVGCNVFILFHLPSI 119
           +V R L + FA  +F R  FC R WY  +G ++F+  HLP +
Sbjct: 120 SVHRILTVMFAG-KFER--FCYR-WYPAIGISMFVYSHLPKL 157


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 465 EQHEQRPTQVHPERIVSILQYLLSRHPSELPFISIEFNLRV 343
           ++H Q P +   E++  I  Y   +HP  LP   +EF LR+
Sbjct: 57  QEHPQNPEEPVVEKVFRISLYPAGQHP--LPVQKVEFKLRL 95


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 512  YMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFAS 342
            Y T  A  +  +  ++    SD+  F+Q+ +  +  T  + +P+   L +SSSI A+
Sbjct: 847  YRTKSAVTTACTSTSKQAARSDEPFFSQRDTRQHSYTQRVQVPIGAALHSSSSIAAN 903


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 187 FCIRFWYSLVGCNVFILFHLPSI 119
           FC R WY  +G ++F+  HLP +
Sbjct: 136 FCYR-WYPAIGISMFVYSHLPKL 157


>Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC373.7 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 206 SFWTTGILYQILV*PCRLQRVHPLSLALHQSRDGFSVAP 90
           S WT  +  QILV P    RV+P +    Q R  FS  P
Sbjct: 53  SAWTEMMDIQILVTPPTKPRVNPFNSVFRQKRQTFSGLP 91


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -3

Query: 495 PGEHAQPGHPEQHEQR---PTQVHPER 424
           P +  QP HP QH+Q    P Q HP++
Sbjct: 520 PQQQQQPQHPHQHQQPASVPMQHHPQQ 546


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +2

Query: 440 CVGRCSCCSGWPGCAC-SPGLL-QSCTRSQVRP 532
           C G   CC G  GC C S G+  Q+C  S   P
Sbjct: 53  CGGMGGCCGGMSGCGCGSMGMCGQTCCPSAPPP 85


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 446 GRCSCCSGWPGCACSPGLLQSCT 514
           G C C  GW G  C   L  SC+
Sbjct: 873 GLCKCEDGWQGSRCQIPLCNSCS 895


>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 226 EDICRRRRGELLKK----EDEAKIITRVDMSDAKYVVGDHRNGDAKIELD 363
           + I    R ELLK+    +DE ++I ++     K+ +GDH + D  I+ D
Sbjct: 407 QGISEEERDELLKQIDEQDDEEEMIRKISSLKPKFKIGDH-DADEHIKSD 455


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 226 EDICRRRRGELLKK----EDEAKIITRVDMSDAKYVVGDHRNGDAKIELD 363
           + I    R ELLK+    +DE ++I ++     K+ +GDH + D  I+ D
Sbjct: 464 QGISEEERDELLKQIDEQDDEEEMIRKISSLKPKFKIGDH-DADEHIKSD 512


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 429 ERIVSILQYLLSRHPSELPFISIEFNLRVTIPVVPDDIFRIGHVH 295
           E +  +LQYLL         +  +FN+R++ P +P  I +    H
Sbjct: 184 ETVSKVLQYLLENEIYLTKCVKAKFNVRLSSPDIPHLIMKFIECH 228


>U39997-3|AAK68389.1|  498|Caenorhabditis elegans Human daz (deleted
           in azoospermia)homolog protein 1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 137 EDEHVATYKAIPESDTEFRSSKTNLGKSKEKISADGAEENY 259
           ED+     K  P+   EFRS K NLG +  KI+++  + +Y
Sbjct: 116 EDQAEEIRKLTPKQ-LEFRSRKLNLGPAIRKINSNSFQPSY 155


>AB025253-1|BAA88577.1|  499|Caenorhabditis elegans DAZ-1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 137 EDEHVATYKAIPESDTEFRSSKTNLGKSKEKISADGAEENY 259
           ED+     K  P+   EFRS K NLG +  KI+++  + +Y
Sbjct: 117 EDQAEEIRKLTPKQ-LEFRSRKLNLGPAIRKINSNSFQPSY 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,111,037
Number of Sequences: 27780
Number of extensions: 400269
Number of successful extensions: 1621
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)