Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20884
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
 Frame = -3

Query: 504 CNSPGEHAQPG-------HPEQHEQRPTQVHPER 424
           C+SPG +           HP QH   P+Q HP R
Sbjct: 299 CHSPGVYPSTAGFLPPSYHPHQHH--PSQYHPHR 330


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 413 YFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFASDMST 294
           Y+    L       +L  S  FA   +W P T+FA+D ++
Sbjct: 91  YWKDERLAFSQEEEVLTLSGDFAEK-IWVPDTFFANDKNS 129


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 350 FASPFLWSPTTYFASDMSTRV 288
           F    +W+PT Y +++ S+ +
Sbjct: 92  FVRDLIWTPTVYVSNEPSSAI 112


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 181 IRFWYSLVGCNVFILFHLPSINRETVFPWLRHR*LCTTLLKPVFH 47
           I  WYS  G    I   + SIN  T    +    + T +L  +FH
Sbjct: 282 IIMWYSPFGIMCLIAGKIMSINNLTATAQMLGLYMVTVILGLLFH 326


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 202 NEPRQIEGEDICRRRRGELLKKEDEAK--IITRVDMSDAKYV 321
           N+ R+IE   +C    G  LKK D+ K  I  + D   A YV
Sbjct: 24  NKLRKIES--VCAEENGIDLKKADDVKKGIFDKNDEKLACYV 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,140
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)