Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20884
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38470.1 68415.m04725 WRKY family transcription factor contai...    34   0.12 
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    30   2.0  
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain...    28   8.1  
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF...    28   8.1  

>At2g38470.1 68415.m04725 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain;
          Length = 519

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -1

Query: 488 SMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFA 309
           +M +  T+ N N       Q G ++  S   L IP   R  A SSI  SP L SP+T F+
Sbjct: 7   TMDNSRTRQNMNGSANWSQQSGRTSTSSLEDLEIP-KFRSFAPSSISISPSLVSPSTCFS 65

Query: 308 SDM 300
             +
Sbjct: 66  PSL 68


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 211 RQIEGEDICRRRRGELLKKEDEAKIITRVDMSDAKYV 321
           R  +  + C   +  L KKE+   +I RVD++DA+++
Sbjct: 715 RTSKASEACEELKNALKKKEEVVILIERVDLADAQFM 751


>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1377

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 238 RRRRGELLKKEDEAKIITRVDMSDAKYVVGDHRNGDAKIELDANKRQ 378
           RRR   +  + D    + R D++D K +V  HR+   +++ D  +R+
Sbjct: 236 RRRERTVASRGDRDHSVDRSDLNDDKSMVKMHRDQRKRVDKDNRERR 282


>At1g21320.1 68414.m02664 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 235

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 486 HAQPGHPEQHEQRPTQVHPE----RIVSILQYLLSRHPS 382
           H QP  P+ H+Q P+Q  P      I ++   ++  HP+
Sbjct: 38  HPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIHTHPN 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,128,883
Number of Sequences: 28952
Number of extensions: 370065
Number of successful extensions: 1287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)