Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20882
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 29 0.94
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 27 2.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.9
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 3.8
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 27 3.8
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 3.8
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 3.8
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 3.8
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 26 5.0
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 8.7
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 0.94
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -3
Query: 524 DNPLRYGATQSRCSPKHVLQ-DPPDPLSVLLGSPITGHRSRRIFSVGRDSDPVEDSTKHC 348
+N R G+ K V + D + +GS I H+ R S+G S+PV D K C
Sbjct: 49 NNKSRPGSLMKSMKRKDVYEFDEDNEFEFEMGSLI--HKPSRAHSLGGTSEPVSDDHKDC 106
Query: 347 FG*S*C*KFTQVEPVSSPIRPSGIASSATSDRLRKRK 237
+ T+ +SP+ S + SD KRK
Sbjct: 107 M------EATRQLLENSPL--SSVVVKTCSDHASKRK 135
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 683 KYINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEPIRTY-LKTASERFFEKAAR 528
K ++S++ +Q + T Y V HV+ QLEP + L T ++ F + R
Sbjct: 393 KLLSSIKKLVQAINQEFGTDDYTPVHHVEEQLEPADYFALLTRADALFINSIR 445
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 412 VLAGSSQWVAIPIRWKIRRSTALAKASVRNLLRL 311
+LAG +VA+ R ++RRS A+ RN RL
Sbjct: 428 MLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 198 KTLCCDLVLCPEYNTCDHWTVRLLQ 124
+TL CD LC + C +W R Q
Sbjct: 580 RTLLCDGYLCQQGGDCPYWRRRYFQ 604
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 261 QRQVEEKKKVKFLERAGDV*HKTLCCDLVLCPEYNTCDH 145
+R +E+K K+ F+ +LC + + CP C H
Sbjct: 237 ERDLEDKNKLPFIPEGNR--KCSLCMEFIHCPAATECGH 273
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 515 LRYGATQSRCSPKHVLQDPPDPLSVLLGSP 426
LRYGA + + ++ P P VL GSP
Sbjct: 199 LRYGANPHQSPAQAFMEQGPLPFKVLCGSP 228
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 308 PVSSPIRPSGIASSATSDRLRKRKR*NSWKELGMSNTKPSAVTS 177
PV+S +P S+ +S + KR S+ E SN +PS S
Sbjct: 163 PVTSSQQPPNDRSTLSSSQKAKRPLKRSYSEKNSSNAEPSGSRS 206
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 503 ATQSRCSPKHVLQDPPDPLSVLLGSPITGHRSR 405
A R P LQD D L LG+ T HR R
Sbjct: 124 AAAGRTKPAAFLQDEDDDLDSNLGTGFTRHRHR 156
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 333 VLEIYSG*ARELTYPSEWNSLFGYQRQVEEKKKVKFLER 217
V E +G A L YPS +SLF + ++ + + ER
Sbjct: 68 VTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAER 106
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 293 IRPSGIASSATSDRLRKRKR*NSWKELGM-SNTKPSAVTSCCVLN 162
+RP G SSAT R +RK+ K L SN SA S V N
Sbjct: 448 VRPPGSGSSATKARNLRRKKARILKRLMQESNDTFSANESTVVAN 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,188
Number of Sequences: 5004
Number of extensions: 67697
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -