Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20882
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0660 + 5704811-5704922,5705349-5705413                           29   3.0  
02_05_1032 + 33637108-33638421                                         29   3.0  
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    28   9.1  
04_03_0059 - 10504901-10506127                                         28   9.1  
03_06_0073 + 31474832-31475284                                         28   9.1  
01_01_0853 + 6658237-6658531,6658683-6658823,6658969-6659238,665...    28   9.1  

>08_01_0660 + 5704811-5704922,5705349-5705413
          Length = 58

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 693 VSENYTCVCHYGTYYASF 746
           VSEN++C+  Y TY+A F
Sbjct: 41  VSENHSCILPYSTYFAQF 58


>02_05_1032 + 33637108-33638421
          Length = 437

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 446 SVLLGSPITGHRSRRIFSVGRDSDPVEDSTKHCFG 342
           ++L G PIT +R +    + RD   ++D  K C G
Sbjct: 295 NILQGKPITVYRGKNRVDLARDFTYIDDIVKGCLG 329


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 573 RTYRF*LEVNVKNLLIYHGAPAILQKLDWIT*RVY-VLAGPVSENYTCVC 719
           RT R  L + V+ L  Y    A+ QK+  +  R Y V+     E YTCVC
Sbjct: 794 RTTRLQL-IEVEKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEEYTCVC 842


>04_03_0059 - 10504901-10506127
          Length = 408

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 655 SSFCKIAGAPWYMRRFFTL 599
           SSFC+IA +P ++RRF +L
Sbjct: 33  SSFCRIATSPRFLRRFRSL 51


>03_06_0073 + 31474832-31475284
          Length = 150

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 209 SPALSRNFTFFFSSTCRW 262
           SP L+R  T  F+ TCRW
Sbjct: 100 SPTLARGITVCFARTCRW 117


>01_01_0853 +
           6658237-6658531,6658683-6658823,6658969-6659238,
           6659324-6659463,6659563-6659709,6660739-6661320
          Length = 524

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 515 EGYRDAPLFQRSVLTLSSDTYVSVLIGSQREEPPH 619
           + + D P F++   TL+S      L  S + EPPH
Sbjct: 258 DNFPDEPAFRKCRATLNSSAKFDSLANSAKWEPPH 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,545,160
Number of Sequences: 37544
Number of extensions: 464507
Number of successful extensions: 1302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)