Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20882
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M79464-1|AAA60390.1| 802|Homo sapiens PML protein. 32 2.5
BC150259-1|AAI50260.1| 1409|Homo sapiens tensin like C1 domain c... 32 2.5
BC142712-1|AAI42713.1| 1409|Homo sapiens tensin like C1 domain c... 32 2.5
BC142668-1|AAI42669.1| 1409|Homo sapiens tensin like C1 domain c... 32 2.5
AK172747-1|BAD18734.1| 261|Homo sapiens protein ( Homo sapiens ... 32 2.5
AF518729-1|AAM74225.1| 1409|Homo sapiens C1 domain-containing ph... 32 2.5
AF518728-1|AAN03866.1| 1419|Homo sapiens C1 domain-containing ph... 32 2.5
AF230404-1|AAG50183.1| 854|Homo sapiens tripartite motif protei... 32 2.5
AF230403-1|AAG50182.1| 824|Homo sapiens tripartite motif protei... 32 2.5
AB028998-1|BAA83027.2| 1505|Homo sapiens KIAA1075 protein protein. 32 2.5
>M79464-1|AAA60390.1| 802|Homo sapiens PML protein.
Length = 802
Score = 31.9 bits (69), Expect = 2.5
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 5/160 (3%)
Frame = -3
Query: 710 SVVFAHGTRKYINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEPIRTYLKTASERFFEKAA 531
SV AH Y S++ P + +D +T ++ Q + R +K SE E
Sbjct: 423 SVPGAHPVPVYAFSIKGP-SYGEDVSNTTTAQK--RKCSQTQCPRKVIKMESEEGKEARL 479
Query: 530 RHDNPLRYGATQSRC-SPKHVLQDPPDPLSVLLGSPITGHRSRRIFSVGRDSDP---VED 363
+P + + S+ SP H L PP P S ++GS + S + S +++ V
Sbjct: 480 ARSSPEQPRPSTSKAVSPPH-LDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVIS 538
Query: 362 STKHCFG*S*C*K-FTQVEPVSSPIRPSGIASSATSDRLR 246
S++ + C + EP SSP S SS LR
Sbjct: 539 SSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPVQSLLR 578
>BC150259-1|AAI50260.1| 1409|Homo sapiens tensin like C1 domain
containing phosphatase (tensin 2) protein.
Length = 1409
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 36 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 95
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 96 RIEHLGSTKSLNHSKQRSTLPR 117
>BC142712-1|AAI42713.1| 1409|Homo sapiens tensin like C1 domain
containing phosphatase (tensin 2) protein.
Length = 1409
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 36 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 95
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 96 RIEHLGSTKSLNHSKQRSTLPR 117
>BC142668-1|AAI42669.1| 1409|Homo sapiens tensin like C1 domain
containing phosphatase (tensin 2) protein.
Length = 1409
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 36 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 95
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 96 RIEHLGSTKSLNHSKQRSTLPR 117
>AK172747-1|BAD18734.1| 261|Homo sapiens protein ( Homo sapiens
cDNA FLJ23908 fis, clone ADSU00701. ).
Length = 261
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 13 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 72
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 73 RIEHLGSTKSLNHSKQRSTLPR 94
>AF518729-1|AAM74225.1| 1409|Homo sapiens C1 domain-containing
phosphatase and tensin-like protein splice variant 1
protein.
Length = 1409
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 36 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 95
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 96 RIEHLGSTKSLNHSKQRSTLPR 117
>AF518728-1|AAN03866.1| 1419|Homo sapiens C1 domain-containing
phosphatase and tensin-like protein splice variant 2
protein.
Length = 1419
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 46 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 105
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 106 RIEHLGSTKSLNHSKQRSTLPR 127
>AF230404-1|AAG50183.1| 854|Homo sapiens tripartite motif protein
TRIM19 delta protein.
Length = 854
Score = 31.9 bits (69), Expect = 2.5
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 5/160 (3%)
Frame = -3
Query: 710 SVVFAHGTRKYINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEPIRTYLKTASERFFEKAA 531
SV AH Y S++ P + +D +T ++ Q + R +K SE E
Sbjct: 445 SVPGAHPVPVYAFSIKGP-SYGEDVSNTTTAQK--RKCSQTQCPRKVIKMESEEGKEARL 501
Query: 530 RHDNPLRYGATQSRC-SPKHVLQDPPDPLSVLLGSPITGHRSRRIFSVGRDSDP---VED 363
+P + + S+ SP H L PP P S ++GS + S + S +++ V
Sbjct: 502 ARSSPEQPRPSTSKAVSPPH-LDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVIS 560
Query: 362 STKHCFG*S*C*K-FTQVEPVSSPIRPSGIASSATSDRLR 246
S++ + C + EP SSP S SS LR
Sbjct: 561 SSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPVQSLLR 600
>AF230403-1|AAG50182.1| 824|Homo sapiens tripartite motif protein
TRIM19 gamma protein.
Length = 824
Score = 31.9 bits (69), Expect = 2.5
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 5/160 (3%)
Frame = -3
Query: 710 SVVFAHGTRKYINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEPIRTYLKTASERFFEKAA 531
SV AH Y S++ P + +D +T ++ Q + R +K SE E
Sbjct: 445 SVPGAHPVPVYAFSIKGP-SYGEDVSNTTTAQK--RKCSQTQCPRKVIKMESEEGKEARL 501
Query: 530 RHDNPLRYGATQSRC-SPKHVLQDPPDPLSVLLGSPITGHRSRRIFSVGRDSDP---VED 363
+P + + S+ SP H L PP P S ++GS + S + S +++ V
Sbjct: 502 ARSSPEQPRPSTSKAVSPPH-LDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVIS 560
Query: 362 STKHCFG*S*C*K-FTQVEPVSSPIRPSGIASSATSDRLR 246
S++ + C + EP SSP S SS LR
Sbjct: 561 SSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPVQSLLR 600
>AB028998-1|BAA83027.2| 1505|Homo sapiens KIAA1075 protein protein.
Length = 1505
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 EKIRRER*PVIGEPKSTESGSGGSCKTC-FGLHRLCVAPYLRGLS*RAAFSKKRSDAVFR 570
EK+ R++ PV K T G+G SC+ C HR C A +R+ A R
Sbjct: 132 EKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVR 191
Query: 571 YVRIGSNWKST*RTSSYTTVLR 636
+ + KS + +T+ R
Sbjct: 192 RIEHLGSTKSLNHSKQRSTLPR 213
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,061,500
Number of Sequences: 237096
Number of extensions: 2517110
Number of successful extensions: 5659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5659
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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