Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20882
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL032625-5|CAH60795.1|  498|Caenorhabditis elegans Hypothetical ...    30   2.0  
U53335-2|AAU87823.1|  190|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   3.5  

>Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical
           protein T03E6.9 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 638 YLAETGLDYVESLCTCGSRERKLHLCMPLRNILCK 742
           ++ + GL Y+  +C+ G+    +H+   +R ILCK
Sbjct: 280 HITDYGLPYLLMICSQGTINNMIHIVPGIRKILCK 314


>AL032625-5|CAH60795.1|  498|Caenorhabditis elegans Hypothetical
           protein Y37H9A.1b protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
 Frame = -3

Query: 680 YINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEPIRTYLKTASE--RFFEKAARHDNPLRY 507
           Y+N     +  + D    +++ E L  DF+ E    + K  SE  RF     + +   RY
Sbjct: 287 YLNEKATAMNSVVDVLDAILHAEALFADFRAEQPSDWPKIESEHPRFEVLKRKIEEERRY 346

Query: 506 GATQSRCSPKHVLQDPPDPLSVLLGSPITGHRSRRIFSVGRDSDPV 369
             TQ R  P    Q  P  +  +  S      +  IFS  R  D V
Sbjct: 347 EETQRR-YPDRPRQPLPPKIQRVESSESLSLLANTIFSKYRSIDDV 391


>U53335-2|AAU87823.1|  190|Caenorhabditis elegans Hypothetical
           protein C55C3.7 protein.
          Length = 190

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 171 CPEYNTCDHWTVRLLQKSQTAQHIDC-RVGHGCP 73
           CP+      WT   LQ SQ A+  DC  V  GCP
Sbjct: 74  CPQTALMSQWTGWQLQNSQWARTRDCLTVSIGCP 107


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -3

Query: 566 KTASERFFEKAARHDNPLRYGATQSRCSPKHVLQDPPDPLSVLLGSPIT---GH-RSRRI 399
           +T S    E AA    P   G  +SR + K  + +  +PLS    +P+    G  RSR  
Sbjct: 526 RTLSTMSMEPAAAAVTPAPRGRPRSRSAAK--VSENTEPLSEAPSAPVKRGRGRPRSRST 583

Query: 398 FSVGRDSDPVEDST 357
            S+  DS+P   ST
Sbjct: 584 MSITEDSEPSTSST 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,942,061
Number of Sequences: 27780
Number of extensions: 384632
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)