Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20882
(751 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.11
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 28 0.11
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.25
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 26 0.43
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 26 0.43
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 25 1.0
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 25 1.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 5.3
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 27.9 bits (59), Expect = 0.11
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 165 QDTARGHSRGFCVRHPQLFPGISPFSFPQPVAGSR-RGYSTRTDR*AHGLNLSKFLTLAL 341
+++ R S G+C R P F G S + PQP++ + + + + + +N +TL
Sbjct: 36 RNSNRSESSGYCGRRPSTF-GSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADITLKN 94
Query: 342 AKAVLRRIFHRIGIAT 389
A + + + + T
Sbjct: 95 AGTPPEAVSYNVAVPT 110
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 27.9 bits (59), Expect = 0.11
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 165 QDTARGHSRGFCVRHPQLFPGISPFSFPQPVAGSR-RGYSTRTDR*AHGLNLSKFLTLAL 341
+++ R S G+C R P F G S + PQP++ + + + + + +N +TL
Sbjct: 36 RNSNRSESSGYCGRRPSTF-GSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADITLKN 94
Query: 342 AKAVLRRIFHRIGIAT 389
A + + + + T
Sbjct: 95 AGTPPEAVSYNVAVPT 110
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.6 bits (56), Expect = 0.25
Identities = 18/67 (26%), Positives = 24/67 (35%)
Frame = +2
Query: 497 ALPHI*EGYRDAPLFQRSVLTLSSDTYVSVLIGSQREEPPHIPRCSGYLAETGLDYVESL 676
A PH + P Q S S ++ IG PH P G ET +++
Sbjct: 428 ATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVET---ILQNA 484
Query: 677 CTCGSRE 697
C C E
Sbjct: 485 CFCARNE 491
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 25.8 bits (54), Expect = 0.43
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 RPR*AI-QTISNRNRHYYFSALRRAPVTYTAVNVLSSLAFLKKT 135
RP AI +T++N R YY PVT N +SL F+ +T
Sbjct: 276 RPARAIVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLPFIDRT 319
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 25.8 bits (54), Expect = 0.43
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 RPR*AI-QTISNRNRHYYFSALRRAPVTYTAVNVLSSLAFLKKT 135
RP AI +T++N R YY PVT N +SL F+ +T
Sbjct: 276 RPARAIVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLPFIDRT 319
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 24.6 bits (51), Expect = 1.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 43 NRHYYFSALRRAPVTYTAVNVLSSLAFLKKTYCPMITGVVFRTQHEVTAEGFVLD 207
N +Y + + VT+ N SSL + K Y +I + R + + G+++D
Sbjct: 294 NSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDS-GYLID 347
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 24.6 bits (51), Expect = 1.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 43 NRHYYFSALRRAPVTYTAVNVLSSLAFLKKTYCPMITGVVFRTQHEVTAEGFVLD 207
N +Y + + VT+ N SSL + K Y +I + R + + G+++D
Sbjct: 294 NSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDS-GYLID 347
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 5.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 40 RNRHYYFSALRRAPVTYTAV 99
RNR +Y +A R P TY ++
Sbjct: 493 RNREFYKNADVRPPFTYASL 512
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,602
Number of Sequences: 438
Number of extensions: 4491
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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