Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20881
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   126   2e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   123   2e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   123   2e-28
At2g22340.1 68415.m02651 hypothetical protein                          33   0.28 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    30   1.5  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.5  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    29   3.4  
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea...    28   7.9  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    28   7.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  126 bits (303), Expect = 2e-29
 Identities = 56/85 (65%), Positives = 67/85 (78%)
 Frame = +2

Query: 254 QNPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 433
           +NP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 132

Query: 434 QDHQPITEASYVNIPVIALCNTDSP 508
            DHQPI E +  NIP+IA C+TDSP
Sbjct: 133 TDHQPIKEGALGNIPIIAFCDTDSP 157



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
 Frame = +1

Query: 505 PIRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE- 681
           P+RFVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ 
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKP 216

Query: 682 KDEQQAKEQ 708
           +DE +A  Q
Sbjct: 217 EDEDEAGPQ 225



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/64 (46%), Positives = 37/64 (57%)
 Frame = +3

Query: 72  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXXXXXXXXX 251
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK          
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 252 IRTP 263
           I  P
Sbjct: 72  IENP 75


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  123 bits (296), Expect = 2e-28
 Identities = 55/85 (64%), Positives = 65/85 (76%)
 Frame = +2

Query: 254 QNPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 433
           +NP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 434 QDHQPITEASYVNIPVIALCNTDSP 508
            DHQPI E +  NIP IA C+TDSP
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSP 158



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 37/67 (55%), Positives = 51/67 (76%)
 Frame = +1

Query: 505 PIRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 684
           P+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE+++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQ 217

Query: 685 DEQQAKE 705
           +  +  E
Sbjct: 218 EGDEEAE 224



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/60 (46%), Positives = 37/60 (61%)
 Frame = +3

Query: 84  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXXXXXXXXXIRTP 263
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K          I  P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  123 bits (296), Expect = 2e-28
 Identities = 55/85 (64%), Positives = 65/85 (76%)
 Frame = +2

Query: 254 QNPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 433
           +NP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 434 QDHQPITEASYVNIPVIALCNTDSP 508
            DHQPI E +  NIP IA C+TDSP
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSP 158



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/60 (46%), Positives = 37/60 (61%)
 Frame = +3

Query: 84  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXXXXXXXXXIRTP 263
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K          I  P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = +1

Query: 505 PIRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 648
           P+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 122 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 241
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 404 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSP*DLWTLLSHATPS 547
           P  ++V D  +    I EAS + IPV+A+ + + P + +  +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 359 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA---SYVNIPVIALCNTDSP*DLWTLL 529
           TP   TNQ++ A  E     +LDP     PI EA   + + +    L   D P DL T++
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEALILAKIGLQCAELRRKDRP-DLGTVV 678


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 558 RVGRLGVAWDSNVHKSYGESVL 493
           R GR+G  WD+NVH++   S+L
Sbjct: 107 RSGRIGRCWDANVHRATCSSLL 128


>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats;  similar to
           PC326 protein  (GI:200241) (PIR2:S37694) [Mus
           musculus];Human (H326) translated mRNA - Homo sapiens,
           EMBL:HS06631
          Length = 481

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 461 SYVNIPVIALCNTDSP*DLWTLLSHATPSLP 553
           S+ +IP++A C  +    LWT +S+   SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 152 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHQN 259
           G  C Q+ C    CD  AS  G  C+ C C   H N
Sbjct: 68  GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNN 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,027,006
Number of Sequences: 28952
Number of extensions: 414719
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)