Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20880
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   2.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   2.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.9  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   6.6  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   8.7  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 380 PYCMESCQNATHYCPNCNAYIGT 448
           PY + +C N T Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 565 THLI*SSQENKQLKRDICTPTEIMFFYLFAFITNSSI 455
           THL  S +++   + D+     IM  YL AF+  S+I
Sbjct: 41  THLTKSERDSLLFRLDLVLAPTIMILYLVAFLDRSNI 77


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 307 RCFEQDSSFCVNPLFDRMLAMCLHPLLHGKLSKCYSLLSELQRLHWNLYKLMSL 468
           R F++      NP++D  +  CL+P L GKL   + +  E+ R+ W +   +S+
Sbjct: 175 RLFDKPHRLSGNPIYDAFMGACLNPRL-GKLLD-FKMFFEV-RIPWFILFFISV 225


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 382 LLHGKLSKCYSLLSELQRLHWNLYKLMSL**MQIN-KKTLFQLAYIYLSSTVYSLVNFIL 558
           +L G +S+C S+ S  Q+LH N+Y   +     +N KK + +    +  + +  LV +++
Sbjct: 133 VLQGNISQCLSVASTFQKLH-NMYMGST----HLNFKKLVLECECAFQKTWLDELVQYLV 187

Query: 559 NVS 567
           N S
Sbjct: 188 NDS 190


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 538 SLVNFILNVSQYILP*FEKKQ*ILLSRTFYLCFVIFIINYFATSFP 675
           SL   ILN  +Y++  F+K   + +S  F   +    I Y + SFP
Sbjct: 90  SLYPIILNAFEYLIKEFKKDVFLKISDVFVCVYSNLNILYISRSFP 135


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 398 CQNATHYCPNCNAYIGTYTN**VCDKC 478
           C+     CP C++++   T   +CD+C
Sbjct: 23  CERCDEKCPICDSHVRPTTLVRICDEC 49


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 645 YNKLFCDKFSNTGMSYYS 698
           YN +F D+F+  G S+YS
Sbjct: 238 YNLVFSDEFNKEGRSFYS 255


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -1

Query: 744 LQFNYDRIGLFL---YILCYNNSSQYWKTCRKIVYYKYN 637
           +Q +YD   +     Y+L   N SQ W+      YY YN
Sbjct: 115 IQLDYDSYSISFDAKYVLVSVNKSQRWRHSSFAQYYLYN 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,271
Number of Sequences: 5004
Number of extensions: 61654
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)