Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20880
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0379 + 43177978-43178572,43178643-43178674 30 1.7
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513... 29 3.9
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 29 3.9
11_06_0703 + 26444128-26446215,26446525-26447226 29 5.2
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 28 6.9
01_01_0070 - 542603-542686,542803-543441 28 6.9
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278... 28 9.1
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 28 9.1
01_01_0088 + 688792-691441,691629-693013 28 9.1
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 179 CSYRPRRGSSTIRDGCASATNGP*TTSLTCPSCHAAIVTRVQHDASSKTHL-FALILCLI 355
C+Y + C +N P C SC A ++ +++ + T L L+L LI
Sbjct: 97 CTYYDDAQQQQQQPDCYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLI 156
Query: 356 GCWPCACIPY 385
+ CAC +
Sbjct: 157 LFYSCACCAF 166
>08_01_0577 +
5132876-5132894,5134352-5134845,5134937-5135162,
5135695-5135917,5136315-5136528,5136769-5136806,
5136977-5137142
Length = 459
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/117 (21%), Positives = 51/117 (43%)
Frame = +3
Query: 360 VGHVLASLTAWKAVKMLLITVRIATPTLEPIQIDEFVINANK*KNIISVGVHISLFNCLF 539
+GHV A+++ K ++ A P + + F++ V V++SL +
Sbjct: 178 IGHVAATVSMSKVAVSFTHIIKSAEPAFS-VLVSRFLLGET-----FPVPVYLSLLPIIG 231
Query: 540 SCELYIKCVTIYPSLI*KKTIDIVVKNILFMFCYIYNKLFCDKFSNTGMSYYSTICI 710
C L + + + ++ N+ F+F I++K S +GM+YY+ + I
Sbjct: 232 GCALAAVTELNFNMV---GFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSI 285
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 251 TTSLTCPSCHAAIVTRVQHDASSKTHLF 334
T L CP CHA I TR + D S F
Sbjct: 416 TPLLCCPECHAPITTRCRTDKRSLVPTF 443
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 197 RGSSTIRDGCASATNGP*TTSLTCPSCHAAIVTRVQHDASSK 322
+GS + D +S+++ P T CPSCH I TR H+ + K
Sbjct: 85 KGSILLADHPSSSSSKP--TRCNCPSCHCNIWTR--HEVAVK 122
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 440 CRRCNSDSNE*HFDSFPCSKGCKHMANILSNKGLTQKDESCSKHRVE 300
C +CN+ + F + C++ N + G+ Q CSKH +E
Sbjct: 1215 CLKCNNGDCQTTFHPY-CARHAGFYMNTKGSGGILQHKAYCSKHSIE 1260
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 183 PIVPVVAPQQFVTVVQAQPMGPEPQV*PAPPVMRP 287
P+ P AP V P P P+ P PPV P
Sbjct: 64 PVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPP 98
>03_05_0448 -
24426509-24426737,24427306-24427401,24427723-24427847,
24428694-24428846,24429921-24430247,24431415-24431630,
24431768-24432112,24433897-24434253
Length = 615
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 227 HNRHELLRSHDGDDRNISIWN 165
H RHE L GDD N+ IW+
Sbjct: 427 HLRHEYLFGSVGDDHNLLIWD 447
>01_01_0090 +
706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 248 RAHWLRLHNRHELLRSHDGDDRNIS 174
R HW+ + + E L+ DGDD I+
Sbjct: 907 RKHWMEILEKEEWLKQKDGDDSIIT 931
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 248 RAHWLRLHNRHELLRSHDGDDRNIS 174
R HW+ + + E L+ DGDD I+
Sbjct: 463 RKHWMEILEKEEWLKQKDGDDSIIT 487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,695,778
Number of Sequences: 37544
Number of extensions: 375787
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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