Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20880
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               31   1.00 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              31   1.3  
SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)                        29   4.0  
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)                   29   5.3  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_26251| Best HMM Match : RVT_1 (HMM E-Value=0.0014)                  28   7.0  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  
SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 365 PCACIPYCMESCQNATHYCPNCNAYI 442
           PC  + YC ++C +  +YCP C  +I
Sbjct: 420 PCGHV-YCCQTCASNLYYCPLCKTFI 444


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +2

Query: 227 ASATNGP*TTSLTCPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQN 406
           A+AT    TT+ T  +  A   T     A    + +    C   C+ C C  YC   C  
Sbjct: 436 ATATATAATTAATATTTTATTTTTTTTTAPVLRYCYCYCYCYYYCY-CYCYYYCYYYCYC 494

Query: 407 ATHYC 421
             +YC
Sbjct: 495 YCYYC 499


>SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)
          Length = 421

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 316 EQDSSFCVNPLFDRMLAMCLHPLLHGKLSKCYSLLSELQRL 438
           E D    +NP+F  +L       ++  LSKC  L+  LQR+
Sbjct: 206 EMDGDLAMNPVFILILIPLFEYAIYPLLSKCNLLVKPLQRM 246


>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
          Length = 582

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCN 433
           CP CH+A+V     D    +HL    +C           +C E CQ A H+  +C+
Sbjct: 409 CPRCHSAVVA----DEEESSHLAHCAVCFYA--------FCTE-CQGAWHHGKSCD 451


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 251 TTSLTCPSCHAAIVTRVQHDASSK--THLFAL--ILCLIGCWPCACIPYC 388
           + S  C  CH   V+ + HD +S    H+  +   +C++ C    CI  C
Sbjct: 45  SVSCLCRICHVVTVSNLSHDVTSSCLCHVVTVSYCVCIVLCPSRVCIVLC 94


>SB_26251| Best HMM Match : RVT_1 (HMM E-Value=0.0014)
          Length = 391

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -3

Query: 610 TISIVFFQIREGYIVTHLI*SSQENKQLKRDICT--PTEIMFFYLFAFITNSSICIGSNV 437
           T++    +I EG+ + HL+    EN  +K+   T   T     Y+   I  +   + SN 
Sbjct: 108 TLTSPLAKILEGFTLEHLMNQVAENLDIKQFSMTGRSTTHALVYMLHIILAALDKVVSNG 167

Query: 436 GVAIRTVMSSILTAFHAVRDASTWPTSYQTKD 341
           G+   T  + +L A    R  + WP   +  D
Sbjct: 168 GIPQGTKSAPLLFAILVNRMLARWPNRVKYVD 199


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 347 CLIGCWPCACIPYCMESCQNATHYCP 424
           C   C+   C P C  SC++ T  CP
Sbjct: 159 CCSQCFWFMCGPLCCYSCESGTDVCP 184


>SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 708 YILCYNNSSQYWKTCRKIVYYKYNK 634
           Y L YN S  YW+ CR  +   Y K
Sbjct: 80  YFLVYNASVLYWQFCRPFLKPNYRK 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,453,765
Number of Sequences: 59808
Number of extensions: 460763
Number of successful extensions: 1326
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)