Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20880
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.76 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.76 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   9.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 450 IQIDEFVINANK*KNIISVGVHISLF 527
           +Q+DEFV+N     N I    H S+F
Sbjct: 539 MQMDEFVVNLKSGSNTIERNSHESVF 564


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 450 IQIDEFVINANK*KNIISVGVHISLF 527
           +Q+DEFV+N     N I    H S+F
Sbjct: 539 MQMDEFVVNLKSGSNTIERNSHESVF 564


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 450 IQIDEFVINANK*KNIISVGVHISLF 527
           +Q+DEFV+N     N I    H S F
Sbjct: 165 MQMDEFVVNLKSGSNTIERNSHESXF 190


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 275 RRGRLNLWFRAHWLRLH 225
           + G +NL   AHWL LH
Sbjct: 501 KTGGVNLKGHAHWLTLH 517


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 438 TLEPIQIDEFVINANK*KNIISVGVHISLF 527
           T +  Q+D   I+  + KN++ +GV +S F
Sbjct: 171 TYDGFQVDLRHIDEIRGKNVVDIGVDLSEF 200


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 604 ILLSRTFYLCFVIFIINYFATSFPILG 684
           ILLS+T +   +  II   + + P+LG
Sbjct: 273 ILLSQTMFFLLISEIIPSTSLALPLLG 299


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 607 LLSRTFYLCFVIFIINYFAT 666
           +L  TF+   VI I +YF T
Sbjct: 4   MLRCTFFFLSVILITSYFVT 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,908
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)