Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20880
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    36   0.038
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    36   0.038
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR...    31   0.82 
At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel...    30   1.9  
At1g32190.1 68414.m03959 expressed protein                             28   5.8  
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ...    28   7.6  
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00...    28   7.6  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   7.6  
At1g06520.1 68414.m00691 phospholipid/glycerol acyltransferase f...    28   7.6  

>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = +2

Query: 212 IRDGCASATNGP*TTSLTCPSCHAAIVTRVQHDASSKTHLFALIL--CLIGCWPCACIPY 385
           I+DGC SAT G  +   TC        +  + ++S ++ L  L+   C + C  C+    
Sbjct: 94  IKDGCGSATGGAKSHDGTCVE-DTENGSNKKLESSERSSLLRLLCSPCALLCSCCSGKDE 152

Query: 386 CMES-CQNATHYCPNCNAYIGTYT-N**VCDKCK*IKKHYFSW 508
             E   ++   YC  C   +  Y+ +  VCDKC     H+  W
Sbjct: 153 SSEQMSEDGMFYCSLCEVEVFKYSKHCRVCDKCVDRFDHHCRW 195


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = +2

Query: 212 IRDGCASATNGP*TTSLTCPSCHAAIVTRVQHDASSKTHLFALIL--CLIGCWPCACIPY 385
           I+DGC SAT G  +   TC        +  + ++S ++ L  L+   C + C  C+    
Sbjct: 94  IKDGCGSATGGAKSHDGTCVE-DTENGSNKKLESSERSSLLRLLCSPCALLCSCCSGKDE 152

Query: 386 CMES-CQNATHYCPNCNAYIGTYT-N**VCDKCK*IKKHYFSW 508
             E   ++   YC  C   +  Y+ +  VCDKC     H+  W
Sbjct: 153 SSEQMSEDGMFYCSLCEVEVFKYSKHCRVCDKCVDRFDHHCRW 195


>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1187

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 373 LHPLLHGKLSKCYSLLSELQRLHWNLYKLMSL 468
           +HP+++      +SL +EL+ LHW  Y L SL
Sbjct: 538 VHPVINFPTGSLHSLPNELRLLHWENYPLKSL 569


>At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel,
           putative (CNGC7) similar to cyclic nucleotide and
           calmodulin-regulated ion channel protein GI:4581207 from
           [Arabidopsis thaliana]
          Length = 709

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 496 MFFYLFAFITNSSICIGSNVGVAI-RTVMSSILTAFHAVRDASTWPTSY 353
           +FFYL     + S CIG +  +A+  T + +I+  F+  R A  + T+Y
Sbjct: 89  LFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQFRTAY 137


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 350 LIGCWPCACIPYCMESCQNATHYCPNC 430
           L GC+ C   P C+ SC   T  C +C
Sbjct: 336 LKGCFSCCKKPSCVSSCCCPTFKCSSC 362


>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
           almost identical to ubiquitin-specific protease 22
           GI:11993484 [Arabidopsis thaliana], one amino acid
           difference
          Length = 557

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 250 NHKFNLPLLSCGHRN*GSTRCFEQDSSFC 336
           +H+F + LL   H N G ++C  QD+  C
Sbjct: 268 SHEFFISLLDRIHENEGKSKCLYQDNEEC 296


>At2g16290.1 68415.m01865 F-box family protein contains Pfam
           PF00646: F-box domain;
          Length = 415

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 260 NLWFRAHWLRLHNRHELLRSHDGDDRNISI 171
           +LW    W+    R E LR H  D R+ ++
Sbjct: 168 HLWNEVEWVETSERVEFLRLHSEDSRDFAV 197


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 386 CMESCQNATHYCPNCNAYIGTY 451
           C   C N ++ CP C+  IG Y
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNY 98


>At1g06520.1 68414.m00691 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 585

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 147 CKEADFVEEAHSSRQTDFLYVQSWPF*LLFHDTQYIIMST 28
           CKEA F  E  S  + + L  + +P  L+FHD +   + T
Sbjct: 295 CKEAYFWNEEESMSKNNALPRERYPKPLIFHDGRLAFLPT 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,257
Number of Sequences: 28952
Number of extensions: 313253
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)