Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20879
         (861 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1JSI0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.7  
UniRef50_Q2SGB9 Cluster: Putative uncharacterized protein; n=1; ...    35   3.0  
UniRef50_Q45R84 Cluster: Peptide synthetase; n=3; Bacteria|Rep: ...    35   3.0  
UniRef50_UPI000069FB05 Cluster: NADPH oxidase 4 (EC 1.6.3.-) (Ki...    33   9.3  
UniRef50_Q23DH8 Cluster: DNA-directed RNA polymerase, omega subu...    33   9.3  

>UniRef50_Q1JSI0 Cluster: Putative uncharacterized protein; n=1;
           Toxoplasma gondii|Rep: Putative uncharacterized protein
           - Toxoplasma gondii
          Length = 1306

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 150 LNKDETPCHSNLDPLNLQIIETXXXXXXXXXXXXXAVDTATVAHRRVTRMHSPTSRELDS 329
           L + E     + D L+ Q + T             + D   + HRR  R+HS  S +  S
Sbjct: 754 LKRAEPALLLHADQLDGQAVATLVWACSRGGACLGSSDLLQMLHRRALRVHSQMSPQGLS 813

Query: 330 R*LW*PKTCLGRATQVRASP 389
             LW   T LGR   +RA P
Sbjct: 814 NTLWGFATTLGRMVDIRAPP 833


>UniRef50_Q2SGB9 Cluster: Putative uncharacterized protein; n=1;
           Hahella chejuensis KCTC 2396|Rep: Putative
           uncharacterized protein - Hahella chejuensis (strain
           KCTC 2396)
          Length = 427

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = -3

Query: 826 TRTTSVRLLTYDVTKEWSKFQDFYTFYSVTIHIPHSMEVEVR 701
           T  T+V  L YD TK WSK +D Y+F S TI I ++ E +++
Sbjct: 161 TEDTAVATLQYDETKSWSKQED-YSF-SETISIKNTYEFDLK 200


>UniRef50_Q45R84 Cluster: Peptide synthetase; n=3; Bacteria|Rep:
            Peptide synthetase - Streptomyces fradiae
          Length = 2143

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 273  VAHRRVTRMHSPTSRELDSR*LW*PKTCLGRATQVRASPPTTRPCAKRMYHS 428
            +A R V R+ +  + ELD R ++  +T    A ++R + P TRP  +RM  S
Sbjct: 2089 LATRLVNRIRAELAEELDVRTVFEARTVAALAARLRTARPDTRPALRRMSRS 2140


>UniRef50_UPI000069FB05 Cluster: NADPH oxidase 4 (EC 1.6.3.-)
           (Kidney superoxide-producing NADPH oxidase) (KOX-1)
           (Renal NAD(P)H-oxidase).; n=1; Xenopus tropicalis|Rep:
           NADPH oxidase 4 (EC 1.6.3.-) (Kidney
           superoxide-producing NADPH oxidase) (KOX-1) (Renal
           NAD(P)H-oxidase). - Xenopus tropicalis
          Length = 547

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 617 LKYFHLVLWRHLNLLPFSGHFSIY*DGSPYLYLHTM 724
           LK+  L+ W  LN+  F   F++Y  G  Y YLH M
Sbjct: 14  LKHLFLLSWLALNIGLFYKTFTVYYSGPQYFYLHQM 49


>UniRef50_Q23DH8 Cluster: DNA-directed RNA polymerase, omega subunit
            family protein; n=1; Tetrahymena thermophila SB210|Rep:
            DNA-directed RNA polymerase, omega subunit family protein
            - Tetrahymena thermophila SB210
          Length = 4331

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 63   NFQQTKESXFKDVPSSSKNFNLETEPKQKLNKDETPC-HSNLDPLNLQIIE 212
            N++Q  +     + +S++NF ++ E  QKL ++E    +SNL  LN QI E
Sbjct: 1687 NYEQQLQINNDQISNSNQNFQIQIENLQKLREEEEKYQNSNLSDLNNQIQE 1737


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,702,418
Number of Sequences: 1657284
Number of extensions: 13420202
Number of successful extensions: 28410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28404
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)