Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20879
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   2.0  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   4.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   4.5  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 24  QPSTSKASDFYGLN--FQQTKESXFKDVPSSSKNFNLETEPKQKLNKDETPCHSNL 185
           Q  +++ S+ Y  N   Q++ E+   +V +SSK+ +++T+P +K  K + P   +L
Sbjct: 414 QRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 469


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 60  LNFQQTKESXFKDVPSSSKNFNLETEPKQKLNKDETPCHSNLDPLNL 200
           L    ++E+ F D   S  +   E    ++   DE P +SN +PL +
Sbjct: 53  LPLSDSEENQFHDFSDSKLSLGFEIGRSKEKFVDEKPFYSNKEPLKI 99


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 78  KESXFKDVPSSSKNFNLETEPKQKLNKDETPCHSNLDPLNLQII 209
           +E   K++PS++K  +      + L++D TP  SN   +  QII
Sbjct: 562 REPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQII 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,079
Number of Sequences: 5004
Number of extensions: 60798
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)