Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20879
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0967 - 23023019-23023158,23023676-23023767,23024474-230247...    29   6.3  

>07_03_0967 -
           23023019-23023158,23023676-23023767,23024474-23024720,
           23024822-23025134
          Length = 263

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -3

Query: 844 SVNFIYTRTTSVRLLTYDVTKEWSKFQDFYTFYSVTIHIPHSMEVEVRRTISVY*KVSTE 665
           SV   + ++   RLL +  +      Q F + +     +P    +E+ R  S   K+S E
Sbjct: 160 SVRSAFEKSVGSRLLKFGGSDTHELLQSFVSLFKDEYKLPKGSVIELSRESSHVLKISIE 219

Query: 664 GQQI 653
           G+++
Sbjct: 220 GEEL 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,214,450
Number of Sequences: 37544
Number of extensions: 350315
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)