Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20879
         (861 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004906-1|AAO49159.1|  468|Drosophila melanogaster LD15982p pro...    29   6.2  
AE014297-4257|AAN14146.1|  777|Drosophila melanogaster CG9990-PB...    29   6.2  
AE014297-4256|AAF56807.1|  808|Drosophila melanogaster CG9990-PA...    29   6.2  

>BT004906-1|AAO49159.1|  468|Drosophila melanogaster LD15982p
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 24  QPSTSKASDFYGLNFQQTKESXFKDVPSSSKNFNLE--TEPKQKLN---KDE---TPCHS 179
           +PS+S+     GLNF Q+KE    D   S    N E  + P  + N    DE     C+S
Sbjct: 3   KPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYS 62

Query: 180 NL 185
           NL
Sbjct: 63  NL 64


>AE014297-4257|AAN14146.1|  777|Drosophila melanogaster CG9990-PB,
           isoform B protein.
          Length = 777

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 24  QPSTSKASDFYGLNFQQTKESXFKDVPSSSKNFNLE--TEPKQKLN---KDE---TPCHS 179
           +PS+S+     GLNF Q+KE    D   S    N E  + P  + N    DE     C+S
Sbjct: 312 KPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYS 371

Query: 180 NL 185
           NL
Sbjct: 372 NL 373


>AE014297-4256|AAF56807.1|  808|Drosophila melanogaster CG9990-PA,
           isoform A protein.
          Length = 808

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 24  QPSTSKASDFYGLNFQQTKESXFKDVPSSSKNFNLE--TEPKQKLN---KDE---TPCHS 179
           +PS+S+     GLNF Q+KE    D   S    N E  + P  + N    DE     C+S
Sbjct: 343 KPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYS 402

Query: 180 NL 185
           NL
Sbjct: 403 NL 404


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,792,288
Number of Sequences: 53049
Number of extensions: 622877
Number of successful extensions: 1344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)