Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20879
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.4  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 859 CVRNISVNFIYTRTTSVRLLTYDVTKEWSKFQDFYTF 749
           C +NI +  I+T + ++ ++ Y + K    F  F  F
Sbjct: 152 CGKNIGMKRIFTSSQNIAVIEYRIPKSGKGFSLFARF 188


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 334 HRESSSRDVGLCIRVTLLCATVAVST 257
           HRE++S  VGL I   L  +T+++ +
Sbjct: 269 HREATSDRVGLGITTVLTLSTISLDS 294


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 799 TYDVTKEWSKFQDFY 755
           TY++ KEW  F D Y
Sbjct: 271 TYELVKEWRDFVDNY 285


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 835 FIYTRTTSVRLLTYDVTKEWSKFQDFYTFYSVTI 734
           FI+  TT   +  Y + KE  K    YT   V I
Sbjct: 282 FIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDI 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,678
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)