Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20878
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 111 6e-26
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 111 1e-25
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.7
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.5
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.5
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 111 bits (268), Expect = 6e-26
Identities = 55/86 (63%), Positives = 65/86 (75%)
Frame = +3
Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
E+IIEGNSLE+VS SAA I+Q VR
Sbjct: 141 EIIIEGNSLENVSQSAANIKQICNVR 166
Score = 70.1 bits (164), Expect = 2e-13
Identities = 32/78 (41%), Positives = 52/78 (66%)
Frame = +1
Query: 19 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 198
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 199 KKELAAVRTVCSHVENMI 252
+K A +RT S + NMI
Sbjct: 62 RKHNACIRTAYSIINNMI 79
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 509 KNKDIRKFLDGLYVSEKTTV 568
+NKDIRKFLDG+YVSE+ +
Sbjct: 166 RNKDIRKFLDGIYVSERGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 111 bits (266), Expect = 1e-25
Identities = 54/86 (62%), Positives = 65/86 (75%)
Frame = +3
Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
E+I+EGNSLE+VS SAA I+Q VR
Sbjct: 141 EIILEGNSLENVSQSAANIKQICNVR 166
Score = 66.5 bits (155), Expect = 3e-12
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = +1
Query: 19 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 198
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 199 KKELAAVRTVCSHVENMI 252
+K A +R+V S + NMI
Sbjct: 62 RKHNACIRSVYSIINNMI 79
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 509 KNKDIRKFLDGLYVSEKTTV 568
+NKDIRKFLDG+YVSE+ +
Sbjct: 166 RNKDIRKFLDGIYVSERGNI 185
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 46 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 213
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 214 AVRTVCSHVENMI 252
+ T+CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 414 NSPKQKDELIIEGNSLEDVSSSAALIQQS 500
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 228 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 82
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 222 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 100
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 212 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 102
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,400
Number of Sequences: 5004
Number of extensions: 52739
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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