Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20878
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    112   2e-25
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   112   2e-25
12_02_0154 + 14494319-14495857                                         28   6.7  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   8.8  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  112 bits (270), Expect = 2e-25
 Identities = 53/86 (61%), Positives = 65/86 (75%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 82  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 141

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           EL+++GN +E VS SAALI Q   V+
Sbjct: 142 ELVLDGNDIELVSRSAALINQKCHVK 167



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/80 (50%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
 Frame = +1

Query: 16  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 192
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 193 GSKKELAAVRTVCSHVENMI 252
           G+++ +AA+RT  SHV+N+I
Sbjct: 61  GTRRTMAAIRTAISHVQNLI 80



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTVVLD 577
           KNKDIRKFLDG+YVS+K T+  D
Sbjct: 167 KNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  112 bits (270), Expect = 2e-25
 Identities = 53/86 (61%), Positives = 65/86 (75%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           EL+++GN +E VS SAALI Q   V+
Sbjct: 135 ELVLDGNDIELVSRSAALINQKCHVK 160



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 37/73 (50%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 213
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 214 AVRTVCSHVENMI 252
           A+RT  SHV+N+I
Sbjct: 61  AIRTAISHVQNLI 73



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTVVLD 577
           KNKDIRKFLDG+YVS+K T+  D
Sbjct: 160 KNKDIRKFLDGIYVSDKGTITED 182


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 103 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 270
           P+ VL+   KH+  D+   +  L ++E+ F +K+ L     V  H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 112 VLKRNF-KHLAVDIRMVNPRLLKVE 183
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,749
Number of Sequences: 37544
Number of extensions: 330747
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)