Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20877
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    26   4.6  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   8.0  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  

>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +3

Query: 225 GSRPWLQHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTR 404
           G +  LQH KDKDK  V       +       TA G  ++   HE    +H Y +   TR
Sbjct: 137 GRKFLLQHYKDKDKLTVLTHCNTGSLATSGYGTALG--IIRSLHESGNLEHAYCTE--TR 192

Query: 405 RY 410
            Y
Sbjct: 193 PY 194


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 219 CRGSRPW--LQHQKDKDKFQVNLDVQHFAPEEISVK 320
           CRGS PW  LQ    + K+Q   D +   P E+  K
Sbjct: 208 CRGSLPWQGLQADTKEQKYQRIRDTKIGTPLEVLCK 243


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 316 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 420
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,624
Number of Sequences: 5004
Number of extensions: 57294
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)