Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20877
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 41 8e-04
03_02_0484 + 8805053-8805538 41 0.001
03_02_0483 - 8804021-8804485 41 0.001
03_02_0478 + 8775892-8776377 40 0.003
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 38 0.010
01_01_0229 - 1943473-1943922 37 0.014
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 37 0.018
01_01_0231 + 1951047-1951499 37 0.018
01_01_0227 + 1933247-1933699 35 0.072
12_02_0136 + 14109557-14109661,14109742-14109804 33 0.29
05_03_0545 - 15244647-15245147,15245342-15245635 33 0.29
02_02_0077 - 6586638-6587165 32 0.51
07_01_1127 + 10456895-10457388,10457488-10458112 30 1.6
04_01_0252 - 3329712-3331061 30 2.1
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827... 29 2.7
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 29 2.7
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 4.8
09_03_0036 + 11772940-11773171,11774995-11775104 29 4.8
06_03_0220 + 18276641-18276915,18278445-18278676 29 4.8
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 6.3
10_07_0141 + 13347648-13348331 28 6.3
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 6.3
03_01_0491 + 3720842-3720958,3721904-3723109 28 6.3
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 8.3
>03_02_0485 - 8808139-8808618
Length = 159
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 438 SVESRLSSDGVLSVIAPRKVP 500
+++ + +GVL+V P++ P
Sbjct: 128 QIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 438 SVESRLSSDGVLSVIAPRKVP 500
+++ + +GVL+V P++ P
Sbjct: 130 QIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 438 SVESRLSSDGVLSVIAPRKVP 500
+++ + +GVL+V P++ P
Sbjct: 123 QIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 438 SVESRLSSDGVLSVIAPRK 494
+++ + +GVL+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 438 SVESRLSSDGVLSVIAPR 491
V++ L +GVL+V P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 37.1 bits (82), Expect = 0.014
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 438 SVESRLSSDGVLSVIAPR 491
V++ + +GVL+V P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 36.7 bits (81), Expect = 0.018
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Frame = +3
Query: 234 PWLQHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ 395
PW + DK+ ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 134 PWDVMEDDKE-VRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKER 192
Query: 396 ----FTRRYALPEGCTAESVESRLSSDGVLSVIAPR 491
+ R ALP+ C V + L +GVL V P+
Sbjct: 193 SVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK 227
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.7 bits (81), Expect = 0.018
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 282 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 437
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 438 SVESRLSSDGVLSVIAPR 491
V++ + +GVL+V P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 342 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 494
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 175 PPCEQRILPPVGHLAAAARD 234
PPC +R+LPP+ HL AR+
Sbjct: 8 PPCRRRLLPPIAHLLPHARE 27
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 357 RVCLQPRCSRPPF*QRFLPGRNAGRPGLLGTYPCP 253
R CLQPR SRPP ++F GR+ R + G P
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNRIVVTGANAVP 255
>02_02_0077 - 6586638-6587165
Length = 175
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 393 QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPP 503
+F RR+ LPE + V + DGVL+V +K PP
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPP 152
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 357 RVCLQPRCSRPPF*QRFLPGRNAGRPGLLGTYPCP 253
R CLQPR SRPP ++F R+ R + G P
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNRIVVTGANAVP 363
>04_01_0252 - 3329712-3331061
Length = 449
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 357 RVCLQPRCSRPPF*QRFLPGRNAGRPGLLGTYPCP 253
R CLQPR +RPP ++F R++ R + G P
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNRIVVTGANAVP 440
>05_03_0085 -
8271718-8272005,8272110-8272393,8273610-8274012,
8274792-8274816,8275686-8276149
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/109 (25%), Positives = 44/109 (40%)
Frame = -1
Query: 549 TGPVWAIGILRSPSLLAAPSWVRLQTTHHLKTAGTPQIQPYSPPAKRSDE*IDAICNHAD 370
T P + L++ SLLA +W +L + +P P PP+K A +
Sbjct: 5 TVPSGGLPRLKAKSLLAQRNWAKLSLRTPYRRGPSP--NP-KPPSKHRRHMASATLDRRP 61
Query: 369 LSSPRVCLQPRCSRPPF*QRFLPGRNAGRPGLLGTYPCPFDAGAKVSSR 223
S+ ++ + P PP P + P L T P PF + + S R
Sbjct: 62 -SAGQLPVLPTTGLPPHSTDAPPSTDFNEPPSLRTGPGPFRSTTRQSPR 109
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 29.5 bits (63), Expect = 2.7
Identities = 29/78 (37%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -1
Query: 360 PRVCLQPRCSRPPF*QRFLPGRNAGR-PGLLGTYPCPFDAGAKVSSRG-SKVTHGR*YSL 187
PR L PR RPP PG GR G T A A V +G KV G
Sbjct: 98 PRPPLPPRPPRPPLPPLREPGEGGGRGDGRGATGTGSSSAAAAVDRKGKKKVDEG----- 152
Query: 186 LTRGPAAALRKSSGVSPK 133
R P ALRKS + K
Sbjct: 153 -DRDPEQALRKSGPLEGK 169
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 304 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 399
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 302 GRNLC*NGGRLHRG*RQTRGEERSAWLH 385
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 339 RCSRPPF*QR---FLPGRNAGRPGLLGTYPCPF 250
RCSRPPF + +P R+ RP + P PF
Sbjct: 94 RCSRPPFSEALPPLIPSRSGRRPSGEDSLPLPF 126
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 458 FRWCVVCNRTQEGAASSEGER--KIPIAQTGPVRKEV 562
F W +CN +G +SSEG++ + I PV++++
Sbjct: 499 FLWAKLCNVPPKGVSSSEGDKVSEASIENRDPVQEDI 535
>10_07_0141 + 13347648-13348331
Length = 227
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 378 GYISRQFTRRYALPEGCTAESVESRLSSD-GVLSVIAPRKVPPAVRVNARF 527
G+I+ +F RRY + + T E E+ L+ D +L+++ P A+ A F
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAALNFRAAF 79
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 LRKIFSVLQPAPL*AENTTARGSPCCRGSRPWLQHQKDKD 263
LR IFS + P E + CC + W+ ++K KD
Sbjct: 657 LRSIFSQFEQEPKEQEPKGDQTRQCCTPPQQWITNKKQKD 696
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 187 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 89
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 582 SPLDWSFTSL-RTGPVWAIGILRSPSLLAAPSWVRLQTTHHLKTA------GTPQIQPYS 424
SPL S T++ RT PV + P + P L L TA GTP +QP+
Sbjct: 276 SPLTSSQTTMARTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASPSPPYGTPLLQPFP 335
Query: 423 PP 418
PP
Sbjct: 336 PP 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,435,741
Number of Sequences: 37544
Number of extensions: 490802
Number of successful extensions: 1388
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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