Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20877
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 76 3e-14
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 71 7e-13
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 1e-10
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 1e-10
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 62 3e-10
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 61 7e-10
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 61 1e-09
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 45 7e-05
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 38 0.006
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.69
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_44943| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-06) 29 3.7
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24) 29 3.7
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 29 4.9
SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1) 28 6.4
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043) 28 8.5
SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11) 28 8.5
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009) 28 8.5
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2) 28 8.5
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 75.8 bits (178), Expect = 3e-14
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 431
D DKFQ+ LDV+ F PEEI+ K +G I V G + ++ G+ S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVD 60
Query: 432 AESVESRLSSDGVLSVIAPRKVPPAVRVN 518
S+ +R++ DG+L V A +K PPA N
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATTEN 89
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 252 KDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGC 428
KD KF + LDV F PEE+ VK + V + E ++HG+ + RQF R + LP
Sbjct: 95 KDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREV 152
Query: 429 TAESVESRLSSDGVLSVIAPRK 494
+++ RL DGVL + A ++
Sbjct: 153 DMDTLVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QKDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEG 425
+ + DK ++ LDV+++ PEEIS+K G I ++GKH+ + +HGY + +F R Y LP+G
Sbjct: 34 EMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSE-GEHGYETSEFHRSYNLPDG 92
Query: 426 CTAESVESRLSSDGVLSVIAPRKVPPAVRVN 518
+V SR++ DG+L + A + P V+
Sbjct: 93 VDVSTVSSRITGDGLLHIEALKAEPQETEVS 123
Score = 27.1 bits (57), Expect(2) = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 402 RRYALPEGCTAESVESRLSSDGVLSVIAPRKVPP 503
R + LP+ +S+ SRL DG L + A R + P
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHP 194
Score = 21.8 bits (44), Expect(2) = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 255 DKDKFQVNLDVQHFAPE 305
D +F V LDV F+P+
Sbjct: 139 DDKRFTVTLDVSSFSPD 155
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 431
+++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVE 61
Query: 432 AESVESRLSSDGVLSVIAPRKVP 500
A +V++R+S+ G L + A + +P
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALP 84
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +3
Query: 243 QHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+ K DKF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 431
+++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVE 61
Query: 432 AESVESRLSSDGVLSVIAPRKVP 500
A +V++R+S+ G L + A + +P
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALP 84
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +3
Query: 243 QHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+ K DKF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 431
+++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVE 61
Query: 432 AESVESRLSSDGVLSVIAPRKVP 500
A +V++R+S+ G L + A + +P
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALP 84
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 261 DKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAE 437
D+ ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 438 SVESRLSSDGVLSVIAPRKVP 500
+V++R+S+ G L + A + +P
Sbjct: 298 NVKTRISNHGQLHIEAMKALP 318
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +3
Query: 243 QHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+ K DKF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +3
Query: 243 QHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+ K DKF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 325 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 383
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+S+ +RL +G L A ++ PA+
Sbjct: 384 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 412
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 431
+++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVE 61
Query: 432 AESVESRLSSDGVLSVIAPRKVP 500
A +V++R+S+ G L + A + +P
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALP 84
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +3
Query: 243 QHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+ K DKF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP
Sbjct: 91 EESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPR 149
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = +3
Query: 279 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 458
LDV+ + PEEIS K +G + V+G+H + + G+ ++F R + LPEG E+V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 459 SDGVLSVIAPRKVP 500
+ G L + A + +P
Sbjct: 71 NHGHLHIEARKALP 84
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 231 RPWLQHQKDK-DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRR 407
+P + +K K DKF + +DV F PE I V+ ++V HE + + H Y + F R+
Sbjct: 85 KPEAELEKAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQ 143
Query: 408 YALPEGCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+ LP +S+ +RL +G L A + V PA+
Sbjct: 144 FVLPREVDMDSLTTRLDKEGKLHFEAKKSVAPAL 177
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 431
+++K ++ LDV+ + PEEIS K +G + V+G+H + G+ ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVE 62
Query: 432 AESVESRLSSDGVLSVIAPRKVP 500
A +V++R+S+ G L + A + +P
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALP 85
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +3
Query: 243 QHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+ KD DKF + +DV+ F PE I V+ ++V HE + + H Y + F R++ LP
Sbjct: 92 KESKD-DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPR 149
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPAV 509
+S+ +RL +G L A ++ PA+
Sbjct: 150 EVDMDSLTTRLDKEGKLHFEAKKRNAPAL 178
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 252 KDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQFTRRYALPE 422
KD KF + LDV F PEE+ VK + V + E ++HG+ +RQF R + LP+
Sbjct: 23 KDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 249 QKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEG 425
Q DK+ ++ ++V+ FA +++S++ ++++G+ +K D G+ RQF R P+
Sbjct: 94 QNDKNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDD--GWCKMRQFCWRRRFPKS 151
Query: 426 CTAESVESRLSSDGVLSVIAPRK 494
+S+++ L +L + A ++
Sbjct: 152 TDMKSIKATLKYGDILEIEAQKE 174
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 351 KHEEKKDQHGYISRQFTRRYAL 416
KHEE++D+HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 315 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 422
+++A GY+V G H K + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_44943| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-06)
Length = 295
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 542 RFGRSESCVHPHCWRHLPGCDYRQHT 465
R +S P CWRH PG R+ T
Sbjct: 244 RVAERQSSFDPECWRHCPGAVSRRAT 269
>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1062
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 231 RPWLQHQKDKDKFQVNLDVQHF---APEEISVKTADGYIVVEG 350
R W +HQ+D +K DVQ F AP ++ T Y+ EG
Sbjct: 373 RRWEKHQEDLEKLITPEDVQKFSKSAPVRAAISTLGRYMEKEG 415
>SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)
Length = 285
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 231 RPWLQHQKDKDKFQVNLDVQHF---APEEISVKTADGYIVVEG 350
R W +HQ+D +K DVQ F AP ++ T Y+ EG
Sbjct: 109 RRWEKHQEDLEKLITPEDVQKFSKSAPVRAAISTLGRYMEKEG 151
>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
Length = 841
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -1
Query: 303 PGRNAGRPGLLGTYPCPFDAGAKVSSRGSKVTHGR*YS 190
PG NA LL F+ G+ VSSR S V+HG YS
Sbjct: 505 PGYNANGDRLLSGVGSVFNVGS-VSSRTSYVSHGSNYS 541
>SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)
Length = 465
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 542 RFGRSESCVHPHCWRHLPGCD 480
R S P CWRH PG D
Sbjct: 294 RVAEIHSSFDPECWRHCPGVD 314
>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
Length = 811
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 423 GCTAESVESRLSSDGVLSVIAPRKVPPA 506
G + +S+ES++ SDG ++P K PA
Sbjct: 531 GSSPQSLESQVLSDGCTKTMSPNKTSPA 558
>SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)
Length = 834
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 231 RPWLQHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHG 380
R W +HQ+D +K DVQ F+ + SV+ A I G++ EK+ G
Sbjct: 462 RRWEKHQEDLEKLITPEDVQKFS-KSASVRAA---ISTLGRYMEKEGSPG 507
>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
Length = 340
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 529 RNLAFTLTAGGTFLGAITDNTPSEDSRDSTDSAVQPSG 416
RN A+ + GT++G +T P T S V P G
Sbjct: 31 RNTAYENSPAGTYVGTLTCEDPEMPDDSCTFSVVGPDG 68
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -2
Query: 497 HLPGCDYRQHTI*RQPGLHRFSRTALRQSVATSELTRYVTMLIFLLLVFAFN 342
H YR H + R+P H +R + + + +T L++ ++AFN
Sbjct: 204 HFERVPYRNHQVLREPARH-VTRFIALSYIGNPQKKKILTELLYFQYMYAFN 254
>SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2)
Length = 845
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 231 RPWLQHQKDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHG 380
R W +HQ+D +K DVQ F+ + SV+ A I G++ EK+ G
Sbjct: 462 RRWEKHQEDLEKLITPEDVQKFS-KSASVRAA---ISTLGRYMEKEGSPG 507
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,452,055
Number of Sequences: 59808
Number of extensions: 513787
Number of successful extensions: 1361
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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